Information for 10-CGTCCCTGACMTR (Motif 20)

A G T C A C T G C G A T A G T C A G T C A G T C A C G T A C T G T C G A A G T C G T A C A C G T C T A G
Reverse Opposite:
G A T C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G C G T A A G T C A C T G
p-value:1e-8
log p-value:-1.911e+01
Information Content per bp:1.911
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.7 +/- 19.5bp
Average Position of motif in Background33.2 +/- 15.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CGTCCCTGACMTR
TGACCTTGACCT-
 A G T C A C T G C G A T A G T C A G T C A G T C A C G T A C T G T C G A A G T C G T A C A C G T C T A G
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CGTCCCTGACMTR
TGACCTTGACCT-
 A G T C A C T G C G A T A G T C A G T C A G T C A C G T A C T G T C G A A G T C G T A C A C G T C T A G
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:CGTCCCTGACMTR
------TGACCT-
 A G T C A C T G C G A T A G T C A G T C A G T C A C G T A C T G T C G A A G T C G T A C A C G T C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CGTCCCTGACMTR
NAGGTCANTGACCT-
 A C G T A C G T A G T C A C T G C G A T A G T C A G T C A G T C A C G T A C T G T C G A A G T C G T A C A C G T C T A G
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CGTCCCTGACMTR----
--TCCCAGMCRAGCCCC
 A G T C A C T G C G A T A G T C A G T C A G T C A C G T A C T G T C G A A G T C G T A C A C G T C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:CGTCCCTGACMTR---
------TGACCTTGAT
 A G T C A C T G C G A T A G T C A G T C A G T C A C G T A C T G T C G A A G T C G T A C A C G T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:CGTCCCTGACMTR-
------TGACCTYA
 A G T C A C T G C G A T A G T C A G T C A G T C A C G T A C T G T C G A A G T C G T A C A C G T C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:CGTCCCTGACMTR---
------TGACCTARTT
 A G T C A C T G C G A T A G T C A G T C A G T C A C G T A C T G T C G A A G T C G T A C A C G T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

Pax2/MA0067.1/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CGTCCCTGACMTR
---NCGTGACN--
 A G T C A C T G C G A T A G T C A G T C A G T C A C G T A C T G T C G A A G T C G T A C A C G T C T A G
A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CGTCCCTGACMTR
-----GTGACCTT
 A G T C A C T G C G A T A G T C A G T C A G T C A C G T A C T G T C G A A G T C G T A C A C G T C T A G
A C G T A C G T A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T