Information for 6-TTAGHGGTTAGAG (Motif 4)

A C G T C G A T C G T A A C T G G A C T A C T G A T C G A C G T A C G T C G T A A C T G C T G A A C T G
Reverse Opposite:
G T A C A G C T G T A C A C G T G T C A C G T A A T G C A G T C C G T A A G T C A C G T C G T A C G T A
p-value:1e-15
log p-value:-3.662e+01
Information Content per bp:1.845
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.3 +/- 26.5bp
Average Position of motif in Background43.4 +/- 18.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX3/MA0684.1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTAGHGGTTAGAG
TTTGCGGTTT---
 A C G T C G A T C G T A A C T G G A C T A C T G A T C G A C G T A C G T C G T A A C T G C T G A A C T G
C G A T A G C T A C G T T A C G A G T C A T C G A C T G A C G T A G C T C G A T A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TTAGHGGTTAGAG
NTNNTTAAGTGGTTANN-
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A A C T G G A C T A C T G A T C G A C G T A C G T C G T A A C T G C T G A A C T G
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G A C G T

RUNX2/MA0511.2/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TTAGHGGTTAGAG
-TTGCGGTTT---
 A C G T C G A T C G T A A C T G G A C T A C T G A T C G A C G T A C G T C G T A A C T G C T G A A C T G
A C G T A G C T A C G T A C T G G A T C A C T G A C T G A C G T G A C T C G A T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTAGHGGTTAGAG
TTAAGTGCTT----
 A C G T A C G T C G A T C G T A A C T G G A C T A C T G A T C G A C G T A C G T C G T A A C T G C T G A A C T G
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTAGHGGTTAGAG
CTTGAGTGGCT----
 A C G T A C G T A C G T C G A T C G T A A C T G G A C T A C T G A T C G A C G T A C G T C G T A A C T G C T G A A C T G
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TTAGHGGTTAGAG
NNTGTGGTTT---
 A C G T C G A T C G T A A C T G G A C T A C T G A T C G A C G T A C G T C G T A A C T G C T G A A C T G
A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TTAGHGGTTAGAG
TTGAGTGSTT----
 A C G T A C G T C G A T C G T A A C T G G A C T A C T G A T C G A C G T A C G T C G T A A C T G C T G A A C T G
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TTAGHGGTTAGAG
TTAAGTGGT-----
 A C G T A C G T C G A T C G T A A C T G G A C T A C T G A T C G A C G T A C G T C G T A A C T G C T G A A C T G
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T A C G T A C G T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TTAGHGGTTAGAG--
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T C G A T C G T A A C T G G A C T A C T G A T C G A C G T A C G T C G T A A C T G C T G A A C T G A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TTAGHGGTTAGAG
NTNNTTAAGTGGNTNAN-
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A A C T G G A C T A C T G A T C G A C G T A C G T C G T A A C T G C T G A A C T G
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G A C G T