Motif 8

Information for 9-TTTTTTTTGK (Motif 8)

Reverse Opposite:

p-value:	1e-3
log p-value:	-8.449e+00
Information Content per bp:	1.510
Number of Target Sequences with motif	27.0
Percentage of Target Sequences with motif	3.48%
Number of Background Sequences with motif	767.3
Percentage of Background Sequences with motif	1.61%
Average Position of motif in Targets	45.2 +/- 30.2bp
Average Position of motif in Background	50.1 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)	1.0
Multiplicity (# of sites on avg that occur together)	1.04
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

PB0116.1_Elf3_2/Jaspar

Match Rank:	1
Score:	0.74
Offset:	-4
Orientation:	reverse strand
Alignment:	----TTTTTTTTGK--- GNATTTTTTTTTTGANC

PH0057.1_Hoxb13/Jaspar

Match Rank:	2
Score:	0.72
Offset:	-3
Orientation:	reverse strand
Alignment:	---TTTTTTTTGK--- NNAATTTTATTGGNTN

HOXB13/MA0901.1/Jaspar

Match Rank:	3
Score:	0.72
Offset:	0
Orientation:	reverse strand
Alignment:	TTTTTTTTGK NTTTTATTGG

HOXA13/MA0650.1/Jaspar

Match Rank:	4
Score:	0.71
Offset:	0
Orientation:	reverse strand
Alignment:	TTTTTTTTGK TTTTTATTGG

HOXD13/MA0909.1/Jaspar

Match Rank:	5
Score:	0.70
Offset:	0
Orientation:	reverse strand
Alignment:	TTTTTTTTGK NTTTTATTGG

PH0078.1_Hoxd13/Jaspar

Match Rank:	6
Score:	0.69
Offset:	-3
Orientation:	reverse strand
Alignment:	---TTTTTTTTGK--- NNANTTTTATTGGNNN

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:	7
Score:	0.69
Offset:	-2
Orientation:	reverse strand
Alignment:	--TTTTTTTTGK-- TTTTTTTTCNNGTN

PB0093.1_Zfp105_1/Jaspar

Match Rank:	8
Score:	0.68
Offset:	-3
Orientation:	reverse strand
Alignment:	---TTTTTTTTGK-- NTNTTGTTGTTTGTN

PB0182.1_Srf_2/Jaspar

Match Rank:	9
Score:	0.67
Offset:	-4
Orientation:	reverse strand
Alignment:	----TTTTTTTTGK--- NNNNTTTTTTTTTNAAC

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:	10
Score:	0.66
Offset:	1
Orientation:	reverse strand
Alignment:	TTTTTTTTGK- -TTTTATTRGN