Information for 2-RGCGCCCTCTGGTGGA (Motif 3)

C T G A A C T G A G T C A C T G T A G C A G T C G T A C A G C T A G T C C G A T T C A G A T C G A G C T A C T G A C T G C T G A
Reverse Opposite:
G A C T A G T C A G T C T C G A T A G C A G T C C G T A A C T G C T G A A C T G C T A G A T C G G T A C C T A G G T A C G A C T
p-value:1e-23
log p-value:-5.439e+01
Information Content per bp:1.757
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.26%
Number of Background Sequences with motif33.0
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets59.4 +/- 21.2bp
Average Position of motif in Background48.6 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.88
Offset:-4
Orientation:forward strand
Alignment:----RGCGCCCTCTGGTGGA
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T C T G A A C T G A G T C A C T G T A G C A G T C G T A C A G C T A G T C C G A T T C A G A T C G A G C T A C T G A C T G C T G A
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-RGCGCCCTCTGGTGGA--
TAGCGCCCCCTGGTGGCCA
 A C G T C T G A A C T G A G T C A C T G T A G C A G T C G T A C A G C T A G T C C G A T T C A G A T C G A G C T A C T G A C T G C T G A A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--RGCGCCCTCTGGTGGA--
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T C T G A A C T G A G T C A C T G T A G C A G T C G T A C A G C T A G T C C G A T T C A G A T C G A G C T A C T G A C T G C T G A A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:RGCGCCCTCTGGTGGA
---GCCATCTGTT---
 C T G A A C T G A G T C A C T G T A G C A G T C G T A C A G C T A G T C C G A T T C A G A T C G A G C T A C T G A C T G C T G A
A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:RGCGCCCTCTGGTGGA
----CCCCCTGCTGTG
 C T G A A C T G A G T C A C T G T A G C A G T C G T A C A G C T A G T C C G A T T C A G A T C G A G C T A C T G A C T G C T G A
A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

ZNF354C/MA0130.1/Jaspar

Match Rank:6
Score:0.55
Offset:11
Orientation:reverse strand
Alignment:RGCGCCCTCTGGTGGA-
-----------GTGGAT
 C T G A A C T G A G T C A C T G T A G C A G T C G T A C A G C T A G T C C G A T T C A G A T C G A G C T A C T G A C T G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:RGCGCCCTCTGGTGGA-
--GGCCYCCTGCTGDGH
 C T G A A C T G A G T C A C T G T A G C A G T C G T A C A G C T A G T C C G A T T C A G A T C G A G C T A C T G A C T G C T G A A C G T
A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:RGCGCCCTCTGGTGGA
---ACCATCTGTT---
 C T G A A C T G A G T C A C T G T A G C A G T C G T A C A G C T A G T C C G A T T C A G A T C G A G C T A C T G A C T G C T G A
A C G T A C G T A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T A C G T A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:RGCGCCCTCTGGTGGA
--CACCCCCGGGGGGG
 C T G A A C T G A G T C A C T G T A G C A G T C G T A C A G C T A G T C C G A T T C A G A T C G A G C T A C T G A C T G C T G A
A C G T A C G T A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G

PB0103.1_Zic3_1/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:RGCGCCCTCTGGTGGA-
--CCCCCCCGGGGGGGT
 C T G A A C T G A G T C A C T G T A G C A G T C G T A C A G C T A G T C C G A T T C A G A T C G A G C T A C T G A C T G C T G A A C G T
A C G T A C G T A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T