Information for 2-GAACAAAGGC (Motif 2)

T C A G T C G A T C G A T A G C T C G A T G C A C G T A C A T G A T C G T G A C
Reverse Opposite:
A C T G A T G C G T A C G C A T A C G T A G C T A T C G A G C T A G C T A G T C
p-value:1e-14
log p-value:-3.271e+01
Information Content per bp:1.681
Number of Target Sequences with motif112.0
Percentage of Target Sequences with motif11.88%
Number of Background Sequences with motif2468.8
Percentage of Background Sequences with motif5.34%
Average Position of motif in Targets53.4 +/- 24.9bp
Average Position of motif in Background49.1 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-GAACAAAGGC
GGAACAAAGR-
 A C G T T C A G T C G A T C G A T A G C T C G A T G C A C G T A C A T G A T C G T G A C
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-GAACAAAGGC
AAAACAAAGG-
 A C G T T C A G T C G A T C G A T A G C T C G A T G C A C G T A C A T G A T C G T G A C
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.86
Offset:-4
Orientation:forward strand
Alignment:----GAACAAAGGC---
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T T C A G T C G A T C G A T A G C T C G A T G C A C G T A C A T G A T C G T G A C A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.86
Offset:-4
Orientation:forward strand
Alignment:----GAACAAAGGC---
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T T C A G T C G A T C G A T A G C T C G A T G C A C G T A C A T G A T C G T G A C A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:GAACAAAGGC
GAACAATGGN
 T C A G T C G A T C G A T A G C T C G A T G C A C G T A C A T G A T C G T G A C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:GAACAAAGGC
-AACAAAGG-
 T C A G T C G A T C G A T A G C T C G A T G C A C G T A C A T G A T C G T G A C
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-GAACAAAGGC
VRRACAAWGG-
 A C G T T C A G T C G A T C G A T A G C T C G A T G C A C G T A C A T G A T C G T G A C
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:GAACAAAGGC
-RACAAWGG-
 T C A G T C G A T C G A T A G C T C G A T G C A C G T A C A T G A T C G T G A C
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.81
Offset:0
Orientation:forward strand
Alignment:GAACAAAGGC
RAACAATGGN
 T C A G T C G A T C G A T A G C T C G A T G C A C G T A C A T G A T C G T G A C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-GAACAAAGGC
AAAACAATGG-
 A C G T T C A G T C G A T C G A T A G C T C G A T G C A C G T A C A T G A T C G T G A C
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T