Information for 13-GGGGTCAAAA (Motif 20)

C T A G C T A G A C T G A C T G A C G T T G A C C T G A C G T A C T G A G T C A
Reverse Opposite:
A C G T A G C T A C G T A G C T A C T G T G C A A G T C A G T C A G T C G A T C
p-value:1e-8
log p-value:-2.048e+01
Information Content per bp:1.841
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif89.5
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets49.8 +/- 25.8bp
Average Position of motif in Background47.9 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)1.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0030.1_Hnf4a_1/Jaspar

Match Rank:1
Score:0.82
Offset:-5
Orientation:forward strand
Alignment:-----GGGGTCAAAA--
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T A C G T A C G T C T A G C T A G A C T G A C T G A C G T T G A C C T G A C G T A C T G A G T C A A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

PB0057.1_Rxra_1/Jaspar

Match Rank:2
Score:0.80
Offset:-5
Orientation:reverse strand
Alignment:-----GGGGTCAAAA--
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A C G T A C G T C T A G C T A G A C T G A C T G A C G T T G A C C T G A C G T A C T G A G T C A A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

PB0118.1_Esrra_2/Jaspar

Match Rank:3
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----GGGGTCAAAA--
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T A C G T C T A G C T A G A C T G A C T G A C G T T G A C C T G A C G T A C T G A G T C A A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GGGGTCAAAA
AGRGGTCA---
 A C G T C T A G C T A G A C T G A C T G A C G T T G A C C T G A C G T A C T G A G T C A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

Rarg/MA0859.1/Jaspar

Match Rank:5
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GGGGTCAAAA------
AAGGTCAAAAGGTCAA
 C T A G C T A G A C T G A C T G A C G T T G A C C T G A C G T A C T G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GGGGTCAAAA
-AGGTCA---
 C T A G C T A G A C T G A C T G A C G T T G A C C T G A C G T A C T G A G T C A
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T

PB0025.1_Glis2_1/Jaspar

Match Rank:7
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------GGGGTCAAAA
NTNTGGGGGGTCNNNA
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C T A G A C T G A C T G A C G T T G A C C T G A C G T A C T G A G T C A
G T A C G A C T T C A G A C G T C T A G C T A G C A T G C A T G A C T G A C T G A C G T T G A C A T C G C G T A C G A T C T G A

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GGGGTCAAAA---
ARGAGGMCAAAATGW
 A C G T A C G T C T A G C T A G A C T G A C T G A C G T T G A C C T G A C G T A C T G A G T C A A C G T A C G T A C G T
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

NR2F1/MA0017.2/Jaspar

Match Rank:9
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GGGGTCAAAA-
CAAAGGTCAAGGG
 A C G T A C G T C T A G C T A G A C T G A C T G A C G T T G A C C T G A C G T A C T G A G T C A A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

PB0157.1_Rara_2/Jaspar

Match Rank:10
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GGGGTCAAAA-
AGAGCGGGGTCAAGTA
 A C G T A C G T A C G T A C G T A C G T C T A G C T A G A C T G A C T G A C G T T G A C C T G A C G T A C T G A G T C A A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A