Information for 2-TGTCCATGGTGCT (Motif 2)

A C G T A C T G A C G T A G T C A G T C C T G A G A C T A C T G A C T G A C G T A T C G A G T C A C G T
Reverse Opposite:
C G T A A C T G T A G C C G T A A G T C A G T C C G T A A G C T A C T G A C T G C G T A A G T C C G T A
p-value:1e-35
log p-value:-8.191e+01
Information Content per bp:1.904
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.1 +/- 18.3bp
Average Position of motif in Background64.2 +/- 5.7bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.85
Offset:-5
Orientation:reverse strand
Alignment:-----TGTCCATGGTGCT---
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A G T C C T G A G A C T A C T G A C T G A C G T A T C G A G T C A C G T A C G T A C G T A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.84
Offset:-5
Orientation:forward strand
Alignment:-----TGTCCATGGTGCT--
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A G T C C T G A G A C T A C T G A C T G A C G T A T C G A G T C A C G T A C G T A C G T
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TGTCCATGGTGCT
CTGTTCCTGG----
 A C G T A C G T A C T G A C G T A G T C A G T C C T G A G A C T A C T G A C T G A C G T A T C G A G T C A C G T
T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGTCCATGGTGCT
BNTGDCCTTG-----
 A C G T A C G T A C G T A C T G A C G T A G T C A G T C C T G A G A C T A C T G A C T G A C G T A T C G A G T C A C G T
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TGTCCATGGTGCT
--NCCATTGTTC-
 A C G T A C T G A C G T A G T C A G T C C T G A G A C T A C T G A C T G A C G T A T C G A G T C A C G T
A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TGTCCATGGTGCT
---CCATTGTTTT
 A C G T A C T G A C G T A G T C A G T C C T G A G A C T A C T G A C T G A C G T A T C G A G T C A C G T
A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGTCCATGGTGCT
TGACCTTGAV---
 A C G T A C T G A C G T A G T C A G T C C T G A G A C T A C T G A C T G A C G T A T C G A G T C A C G T
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TGTCCATGGTGCT
CTGACCTTTG----
 A C G T A C G T A C T G A C G T A G T C A G T C C T G A G A C T A C T G A C T G A C G T A T C G A G T C A C G T
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TGTCCATGGTGCT
TGACCTTGAN---
 A C G T A C T G A C G T A G T C A G T C C T G A G A C T A C T G A C T G A C G T A T C G A G T C A C G T
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:forward strand
Alignment:TGTCCATGGTGCT
---CCATTGTTYB
 A C G T A C T G A C G T A G T C A G T C C T G A G A C T A C T G A C T G A C G T A T C G A G T C A C G T
A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G