Information for 12-CAGARAGAGG (Motif 17)

A T G C G C T A T A C G T G C A T C G A G C T A C T A G C G T A A C T G T A C G
Reverse Opposite:
A T G C T G A C G C A T G A T C C G A T A G C T A C G T A T G C C G A T T A C G
p-value:1e-9
log p-value:-2.206e+01
Information Content per bp:1.559
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif4.20%
Number of Background Sequences with motif503.5
Percentage of Background Sequences with motif1.13%
Average Position of motif in Targets38.1 +/- 26.7bp
Average Position of motif in Background51.4 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CAGARAGAGG---
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A T G C G C T A T A C G T G C A T C G A G C T A C T A G C G T A A C T G T A C G A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAGARAGAGG-
ACAGGATGTGGT
 A C G T A T G C G C T A T A C G T G C A T C G A G C T A C T A G C G T A A C T G T A C G A C G T
T C G A T A G C G T C A A C T G C T A G C G T A C G A T A C T G A C G T A C T G A C T G A C G T

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CAGARAGAGG
--AACAAAGG
 A T G C G C T A T A C G T G C A T C G A G C T A C T A G C G T A A C T G T A C G
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

PB0137.1_Irf3_2/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAGARAGAGG-----
-GGAGAAAGGTGCGA
 A T G C G C T A T A C G T G C A T C G A G C T A C T A G C G T A A C T G T A C G A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CAGARAGAGG
ACAGGAAGTG-
 A C G T A T G C G C T A T A C G T G C A T C G A G C T A C T A G C G T A A C T G T A C G
T C G A T A G C T G C A A C T G A C T G C G T A C G T A C T A G G A C T T A C G A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CAGARAGAGG
--RACAAWGG
 A T G C G C T A T A C G T G C A T C G A G C T A C T A G C G T A A C T G T A C G
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CAGARAGAGG
AAAACAAAGG
 A T G C G C T A T A C G T G C A T C G A G C T A C T A G C G T A A C T G T A C G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CAGARAGAGG
VRRACAAWGG
 A T G C G C T A T A C G T G C A T C G A G C T A C T A G C G T A A C T G T A C G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

SPIC/MA0687.1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CAGARAGAGG-----
-AAAAAGAGGAAGTA
 A T G C G C T A T A C G T G C A T C G A G C T A C T A G C G T A A C T G T A C G A C G T A C G T A C G T A C G T A C G T
A C G T G T C A C T G A G T C A G T C A C G T A T A C G T G C A A T C G C A T G G C T A T G C A C T A G G C A T G T C A

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CAGARAGAGG
ACAGGAAGTG-
 A C G T A T G C G C T A T A C G T G C A T C G A G C T A C T A G C G T A A C T G T A C G
T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G A C G T