Information for 10-GATCCTAACC (Motif 17)

A T C G G C T A A C G T A T G C A G T C A C G T G T C A C G T A A G T C A T G C
Reverse Opposite:
A T C G A C T G A C G T A C G T C G T A A C T G A T C G C G T A C G A T T A G C
p-value:1e-8
log p-value:-2.048e+01
Information Content per bp:1.865
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif35.2
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets54.1 +/- 30.1bp
Average Position of motif in Background47.8 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GATCCTAACC--
-NNACTTACCTN
 A T C G G C T A A C G T A T G C A G T C A C G T G T C A C G T A A G T C A T G C A C G T A C G T
A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GATCCTAACC----
ACTATGCCAACCTACC
 A C G T A C G T A T C G G C T A A C G T A T G C A G T C A C G T G T C A C G T A A G T C A T G C A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

PB0181.1_Spdef_2/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GATCCTAACC-
GATAACATCCTAGTAG
 A C G T A C G T A C G T A C G T A C G T A T C G G C T A A C G T A T G C A G T C A C G T G T C A C G T A A G T C A T G C A C G T
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GATCCTAACC
-ATGCCAACC
 A T C G G C T A A C G T A T G C A G T C A C G T G T C A C G T A A G T C A T G C
A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GATCCTAACC-
---GCTAATCC
 A T C G G C T A A C G T A T G C A G T C A C G T G T C A C G T A A G T C A T G C A C G T
A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GATCCTAACC--
TATGCWAATBAV
 A T C G G C T A A C G T A T G C A G T C A C G T G T C A C G T A A G T C A T G C A C G T A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

GSC/MA0648.1/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GATCCTAACC---
---GCTAATCCCC
 A T C G G C T A A C G T A T G C A G T C A C G T G T C A C G T A A G T C A T G C A C G T A C G T A C G T
A C G T A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

PB0185.1_Tcf1_2/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GATCCTAACC-------
---NNTAATCCNGNCNN
 A T C G G C T A A C G T A T G C A G T C A C G T G T C A C G T A A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GATCCTAACC--
----YTAATCCY
 A T C G G C T A A C G T A T G C A G T C A C G T G T C A C G T A A G T C A T G C A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

GSC2/MA0891.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GATCCTAACC---
---CCTAATCCGC
 A T C G G C T A A C G T A T G C A G T C A C G T G T C A C G T A A G T C A T G C A C G T A C G T A C G T
A C G T A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C