Information for 5-AGCATCTCAACGC (Motif 4)

C G T A A T C G A G T C C G T A A C G T A G T C A C G T A G T C C G T A C G T A A G T C T C A G A T G C
Reverse Opposite:
A T C G A G T C A C T G A C G T A C G T A C T G C G T A A C T G G T C A A C G T A C T G A T G C A C G T
p-value:1e-10
log p-value:-2.502e+01
Information Content per bp:1.933
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.2 +/- 19.6bp
Average Position of motif in Background18.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGCATCTCAACGC
AGCCACTCAAG--
 C G T A A T C G A G T C C G T A A C G T A G T C A C G T A G T C C G T A C G T A A G T C T C A G A T G C
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGCATCTCAACGC-
--SCTGTCARCACC
 C G T A A T C G A G T C C G T A A C G T A G T C A C G T A G T C C G T A C G T A A G T C T C A G A T G C A C G T
A C G T A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGCATCTCAACGC-
TACCATAGCAACGGT
 A C G T C G T A A T C G A G T C C G T A A C G T A G T C A C G T A G T C C G T A C G T A A G T C T C A G A T G C A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:4
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AGCATCTCAACGC
ATTTGCATAACAAAG-
 A C G T A C G T A C G T C G T A A T C G A G T C C G T A A C G T A G T C A C G T A G T C C G T A C G T A A G T C T C A G A T G C
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGCATCTCAACGC-
CCGCATAGCAACGGA
 A C G T C G T A A T C G A G T C C G T A A C G T A G T C A C G T A G T C C G T A C G T A A G T C T C A G A T G C A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AGCATCTCAACGC-----
GAAGTANCACGAATNMRAGT
 A C G T A C G T C G T A A T C G A G T C C G T A A C G T A G T C A C G T A G T C C G T A C G T A A G T C T C A G A T G C A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.53
Offset:3
Orientation:forward strand
Alignment:AGCATCTCAACGC
---ACATCAAAGG
 C G T A A T C G A G T C C G T A A C G T A G T C A C G T A G T C C G T A C G T A A G T C T C A G A T G C
A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---AGCATCTCAACGC
ATTTGCATAACAATG-
 A C G T A C G T A C G T C G T A A T C G A G T C C G T A A C G T A G T C A C G T A G T C C G T A C G T A A G T C T C A G A T G C
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:9
Score:0.50
Offset:-8
Orientation:forward strand
Alignment:--------AGCATCTCAACGC
ADGGYAGYAGCATCT------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T C G A G T C C G T A A C G T A G T C A C G T A G T C C G T A C G T A A G T C T C A G A T G C
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T

ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.50
Offset:0
Orientation:forward strand
Alignment:AGCATCTCAACGC
AACATCTGGA---
 C G T A A T C G A G T C C G T A A C G T A G T C A C G T A G T C C G T A C G T A A G T C T C A G A T G C
T G C A C T G A A T G C G T C A A C G T A T G C A C G T A C T G A C T G T G C A A C G T A C G T A C G T