Information for 4-CAGCCTGDAAHCCCCH (Motif 8)

A G T C C G T A A C T G G T A C A G T C A C G T A C T G C A G T C G T A G C T A G A T C G T A C A G T C A G T C A G T C G A C T
Reverse Opposite:
C G T A C T A G C T A G A C T G A C T G C T A G C G A T C G A T G T C A A G T C C G T A A C T G A C T G A G T C A C G T A C T G
p-value:1e-13
log p-value:-3.148e+01
Information Content per bp:1.768
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.3 +/- 27.7bp
Average Position of motif in Background61.6 +/- 12.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTGDAAHCCCCH
BCAGACWA---------
 A C G T A G T C C G T A A C T G G T A C A G T C A C G T A C T G C A G T C G T A G C T A G A T C G T A C A G T C A G T C A G T C G A C T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CAGCCTGDAAHCCCCH
-TGCCTGCGYCMCCTT
 A G T C C G T A A C T G G T A C A G T C A C G T A C T G C A G T C G T A G C T A G A T C G T A C A G T C A G T C A G T C G A C T
A C G T C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTGDAAHCCCCH
CCAGACAG---------
 A C G T A G T C C G T A A C T G G T A C A G T C A C G T A C T G C A G T C G T A G C T A G A T C G T A C A G T C A G T C A G T C G A C T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Spz1/MA0111.1/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CAGCCTGDAAHCCCCH
---GCTGTTACCCT--
 A G T C C G T A A C T G G T A C A G T C A C G T A C T G C A G T C G T A G C T A G A T C G T A C A G T C A G T C A G T C G A C T
A C G T A C G T A C G T A C T G T G A C A G C T A T C G G C A T C G A T G C T A G T A C A G T C T A G C A G C T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CAGCCTGDAAHCCCCH
DCTCAGCAGG---------
 A C G T A C G T A C G T A G T C C G T A A C T G G T A C A G T C A C G T A C T G C A G T C G T A G C T A G A T C G T A C A G T C A G T C A G T C G A C T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CAGCCTGDAAHCCCCH
CCACACAGCAGGAGA------
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G G T A C A G T C A C G T A C T G C A G T C G T A G C T A G A T C G T A C A G T C A G T C A G T C G A C T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCTGDAAHCCCCH
CACAGN------------
 A C G T A C G T A G T C C G T A A C T G G T A C A G T C A C G T A C T G C A G T C G T A G C T A G A T C G T A C A G T C A G T C A G T C G A C T
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CAGCCTGDAAHCCCCH
GAGCACAGCAGGACA------
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G G T A C A G T C A C G T A C T G C A G T C G T A G C T A G A T C G T A C A G T C A G T C A G T C G A C T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAGCCTGDAAHCCCCH
CAGCC-----------
 A G T C C G T A A C T G G T A C A G T C A C G T A C T G C A G T C G T A G C T A G A T C G T A C A G T C A G T C A G T C G A C T
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTGDAAHCCCCH
CCAGACRSVB-------
 A C G T A G T C C G T A A C T G G T A C A G T C A C G T A C T G C A G T C G T A G C T A G A T C G T A C A G T C A G T C A G T C G A C T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T