Information for 18-CTCAGAAGGTCAC (Motif 27)

A G T C G A C T G T A C C G T A A C T G C G T A C T G A A C T G C T A G C G A T A G T C C G T A T A G C
Reverse Opposite:
A T C G A C G T A C T G C G T A G A T C G T A C A G C T C G A T G T A C C G A T A C T G C T G A A C T G
p-value:1e-8
log p-value:-1.974e+01
Information Content per bp:1.761
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif21.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets50.1 +/- 23.3bp
Average Position of motif in Background39.8 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.76
Offset:5
Orientation:forward strand
Alignment:CTCAGAAGGTCAC
-----AAGGTCAC
 A G T C G A C T G T A C C G T A A C T G C G T A C T G A A C T G C T A G C G A T A G T C C G T A T A G C
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.68
Offset:6
Orientation:forward strand
Alignment:CTCAGAAGGTCAC
------AGGTCA-
 A G T C G A C T G T A C C G T A A C T G C G T A C T G A A C T G C T A G C G A T A G T C C G T A T A G C
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CTCAGAAGGTCAC
---TCAAGGTCAN
 A G T C G A C T G T A C C G T A A C T G C G T A C T G A A C T G C T A G C G A T A G T C C G T A T A G C
A C G T A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CTCAGAAGGTCAC
--ATCAAGGTCA-
 A G T C G A C T G T A C C G T A A C T G C G T A C T G A A C T G C T A G C G A T A G T C C G T A T A G C
A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:5
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CTCAGAAGGTCAC
---TCAAGGTCAT
 A G T C G A C T G T A C C G T A A C T G C G T A C T G A A C T G C T A G C G A T A G T C C G T A T A G C
A C G T A C G T A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CTCAGAAGGTCAC
----TRAGGTCA-
 A G T C G A C T G T A C C G T A A C T G C G T A C T G A A C T G C T A G C G A T A G T C C G T A T A G C
A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

Rarg/MA0859.1/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CTCAGAAGGTCAC
AAGGTCAAAAGGTCAA
 A C G T A C G T A C G T A G T C G A C T G T A C C G T A A C T G C G T A C T G A A C T G C T A G C G A T A G T C C G T A T A G C
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A

PB0053.1_Rara_1/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTCAGAAGGTCAC---
TCTCAAAGGTCACCTG
 A G T C G A C T G T A C C G T A A C T G C G T A C T G A A C T G C T A G C G A T A G T C C G T A T A G C A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Rarb/MA0857.1/Jaspar

Match Rank:9
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CTCAGAAGGTCAC
AAAGGTCAAAAGGTCA-
 A C G T A C G T A C G T A C G T A G T C G A C T G T A C C G T A A C T G C G T A C T G A A C T G C T A G C G A T A G T C C G T A T A G C
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A A C G T

RARA/MA0729.1/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CTCAGAAGGTCAC--
GAGGTCAAAAGGTCAATG
 A C G T A C G T A C G T A G T C G A C T G T A C C G T A A C T G C G T A C T G A A C T G C T A G C G A T A G T C C G T A T A G C A C G T A C G T
C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G