Information for 21-GCTGCAGCGA (Motif 40)

A T C G A G T C A C G T A C T G A G T C C G T A A C T G A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G A G T C A C G T A C T G G T A C C G T A A C T G A T G C
p-value:1e-6
log p-value:-1.466e+01
Information Content per bp:1.945
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif9.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets39.6 +/- 25.2bp
Average Position of motif in Background55.8 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GCTGCAGCGA----
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T A T C G A G T C A C G T A C T G A G T C C G T A A C T G A G T C A C T G C G T A A C G T A C G T A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GCTGCAGCGA
----CAGCC-
 A T C G A G T C A C G T A C T G A G T C C G T A A C T G A G T C A C T G C G T A
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCTGCAGCGA
CGCAGCTGCG-
 A C G T A T C G A G T C A C G T A C T G A G T C C G T A A C T G A G T C A C T G C G T A
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCTGCAGCGA--
TNTCCTGCTGTGNNG
 A C G T A C G T A C G T A T C G A G T C A C G T A C T G A G T C C G T A A C T G A G T C A C T G C G T A A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GCTGCAGCGA
GRTGMTRGAGCC-
 A C G T A C G T A C G T A T C G A G T C A C G T A C T G A G T C C G T A A C T G A G T C A C T G C G T A
A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GCTGCAGCGA--
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T A T C G A G T C A C G T A C T G A G T C C G T A A C T G A G T C A C T G C G T A A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GCTGCAGCGA
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C A C G T A C T G A G T C C G T A A C T G A G T C A C T G C G T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

POL008.1_DCE_S_I/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCTGCAGCGA
GCTTCC----
 A T C G A G T C A C G T A C T G A G T C C G T A A C T G A G T C A C T G C G T A
A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GCTGCAGCGA
CCCCCTGCTGTG-
 A C G T A C G T A C G T A T C G A G T C A C G T A C T G A G T C C G T A A C T G A G T C A C T G C G T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GCTGCAGCGA---
---GCAGTGATTT
 A T C G A G T C A C G T A C T G A G T C C G T A A C T G A G T C A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T