Information for 19-GAATGCATAT (Motif 39)

A C T G G T C A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A A C G T A C T G A G T C C G T A A C G T A C G T A G T C
p-value:1e-6
log p-value:-1.589e+01
Information Content per bp:1.939
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif7.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets42.7 +/- 22.4bp
Average Position of motif in Background40.9 +/- 19.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.81
Offset:2
Orientation:forward strand
Alignment:GAATGCATAT--
--ATGMATATDC
 A C T G G T C A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.76
Offset:2
Orientation:forward strand
Alignment:GAATGCATAT--
--ATGAATATTC
 A C T G G T C A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GAATGCATAT---
ATATGCAAATNNN
 A C T G G T C A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

PH0148.1_Pou3f3/Jaspar

Match Rank:4
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---GAATGCATAT----
AAAATATGCATAATAAA
 A C G T A C G T A C G T A C T G G T C A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Pou2f3/MA0627.1/Jaspar

Match Rank:5
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GAATGCATAT----
TTGTATGCAAATTAGA
 A C G T A C G T A C T G G T C A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GAATGCATAT----
TTGTATGCAAATTAGA
 A C G T A C G T A C T G G T C A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0144.1_Pou2f2/Jaspar

Match Rank:7
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GAATGCATAT----
TTGTATGCAAATTAGA
 A C G T A C G T A C T G G T C A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:8
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GAATGCATAT------
-YATGCATATRCATRT
 A C T G G T C A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GAATGCATAT---
-WATGCAAATGAG
 A C T G G T C A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GAATGCATAT
TTATGCAAAT
 A C T G G T C A G T C A A C G T A C T G A G T C C G T A A C G T C G T A A C G T
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T