Information for 20-GGCAGAACAGACT (Motif 32)

C T A G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G C G A T G T A C A C G T A C T G A C G T A C G T A G T C A C G T A C T G A G T C A G T C
p-value:1e-8
log p-value:-1.978e+01
Information Content per bp:1.933
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.5 +/- 30.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GGCAGAACAGACT----
--VAGRACAKNCTGTBC
 C T A G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGCAGAACAGACT-------
GGYAGCAYDTGCTDCCCNNN
 C T A G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C T G C T A G G A T C C G T A C T A G A G T C T G C A G A C T C G T A A C G T T C A G A G T C A C G T C T G A A G T C A G T C G A T C C G T A T C A G T A C G

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GGCAGAACAGACT----
--VAGRACAKWCTGTYC
 C T A G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GGCAGAACAGACT----
--AAGAACATWHTGTTC
 C T A G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C

PB0130.1_Gm397_2/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGCAGAACAGACT---
AGCGGCACACACGCAA
 C T A G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0121.1_Foxj3_2/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GGCAGAACAGACT-
AACACCAAAACAAAGGA
 A C G T A C G T A C G T C T A G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G C G T A A G T C A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGCAGAACAGACT-----
--NAGAACAGNCTGTNCT
 C T A G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:GGCAGAACAGACT-
------BCAGACWA
 C T A G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GGCAGAACAGACT---
------CCAGACRSVB
 C T A G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GGCAGAACAGACT-----
--NAGNACANNNTGTNCT
 C T A G A C T G A G T C C G T A A C T G C G T A G T C A A G T C C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T