Information for 17-SKTGKCAAGAKYAMAC (Motif 19)

A T C G A C T G A C G T A T C G C A G T A G T C G T C A C T G A A C T G C G T A A C T G A G C T C G T A G T A C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G A C G T C T G A G T A C A C G T A G T C A G C T A C G T A C T G G T C A A T G C C G T A G T A C A T G C
p-value:1e-11
log p-value:-2.554e+01
Information Content per bp:1.838
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.0 +/- 12.2bp
Average Position of motif in Background18.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:SKTGKCAAGAKYAMAC
-TTGCCAAG-------
 A T C G A C T G A C G T A T C G C A G T A G T C G T C A C T G A A C T G C G T A A C T G A G C T C G T A G T A C C G T A A G T C
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:SKTGKCAAGAKYAMAC
CCTGTCAA--------
 A T C G A C T G A C G T A T C G C A G T A G T C G T C A C T G A A C T G C G T A A C T G A G C T C G T A G T A C C G T A A G T C
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:SKTGKCAAGAKYAMAC
GGTGCCAAGT------
 A T C G A C T G A C G T A T C G C A G T A G T C G T C A C T G A A C T G C G T A A C T G A G C T C G T A G T A C C G T A A G T C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:SKTGKCAAGAKYAMAC
GCTGTCAA--------
 A T C G A C T G A C G T A T C G C A G T A G T C G T C A C T G A A C T G C G T A A C T G A G C T C G T A G T A C C G T A A G T C
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:SKTGKCAAGAKYAMAC
-NTGTCAN--------
 A T C G A C T G A C G T A T C G C A G T A G T C G T C A C T G A A C T G C G T A A C T G A G C T C G T A G T A C C G T A A G T C
A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:SKTGKCAAGAKYAMAC
---BTCAAGGTCA---
 A T C G A C T G A C G T A T C G C A G T A G T C G T C A C T G A A C T G C G T A A C T G A G C T C G T A G T A C C G T A A G T C
A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:SKTGKCAAGAKYAMAC
RHTGWCAR--------
 A T C G A C T G A C G T A T C G C A G T A G T C G T C A C T G A A C T G C G T A A C T G A G C T C G T A G T A C C G T A A G T C
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Mecom/MA0029.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:SKTGKCAAGAKYAMAC
-AAGATAAGATAACA-
 A T C G A C T G A C G T A T C G C A G T A G T C G T C A C T G A A C T G C G T A A C T G A G C T C G T A G T A C C G T A A G T C
A C G T C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:SKTGKCAAGAKYAMAC
----TCAAGGTCATA-
 A T C G A C T G A C G T A T C G C A G T A G T C G T C A C T G A A C T G C G T A A C T G A G C T C G T A G T A C C G T A A G T C
A C G T A C G T A C G T A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-SKTGKCAAGAKYAMAC
ARNTGACA---------
 A C G T A T C G A C T G A C G T A T C G C A G T A G T C G T C A C T G A A C T G C G T A A C T G A G C T C G T A G T A C C G T A A G T C
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T