Information for 3-GGRAWTTCCC (Motif 3)

C A T G C T A G T C G A T G C A C G A T A C G T A G C T G T A C G T A C G T A C
Reverse Opposite:
C A T G A C T G A C T G C T G A G T C A G C T A A C G T A G C T A G T C G T A C
p-value:1e-22
log p-value:-5.174e+01
Information Content per bp:1.751
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif4.73%
Number of Background Sequences with motif273.3
Percentage of Background Sequences with motif0.57%
Average Position of motif in Targets47.1 +/- 21.5bp
Average Position of motif in Background52.4 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--GGRAWTTCCC
NGGGGATTTCCC
 A C G T A C G T C A T G C T A G T C G A T G C A C G A T A C G T A G C T G T A C G T A C G T A C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GGRAWTTCCC
GGAAATTCCC
 C A T G C T A G T C G A T G C A C G A T A C G T A G C T G T A C G T A C G T A C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:GGRAWTTCCC
GGAAATCCCC
 C A T G C T A G T C G A T G C A C G A T A C G T A G C T G T A C G T A C G T A C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:GGRAWTTCCC
GGAAATTCCC
 C A T G C T A G T C G A T G C A C G A T A C G T A G C T G T A C G T A C G T A C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-GGRAWTTCCC
GGGGATTTCC-
 A C G T C A T G C T A G T C G A T G C A C G A T A C G T A G C T G T A C G T A C G T A C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:6
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--GGRAWTTCCC-
AGGGGATTCCCCT
 A C G T A C G T C A T G C T A G T C G A T G C A C G A T A C G T A G C T G T A C G T A C G T A C A C G T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-GGRAWTTCCC-
GGGGATTCCCCC
 A C G T C A T G C T A G T C G A T G C A C G A T A C G T A G C T G T A C G T A C G T A C A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--GGRAWTTCCC-
AGGGGATTCCCCT
 A C G T A C G T C A T G C T A G T C G A T G C A C G A T A C G T A G C T G T A C G T A C G T A C A C G T
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

PB0058.1_Sfpi1_1/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GGRAWTTCCC-----
-NNACTTCCTCTTNN
 C A T G C T A G T C G A T G C A C G A T A C G T A G C T G T A C G T A C G T A C A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G C T A C T G A A T G C C G A T C G A T A G T C A G T C A C G T A G T C G C A T G C A T G C T A T C G A

MZF1/MA0056.1/Jaspar

Match Rank:10
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:GGRAWTTCCC-
-----TCCCCA
 C A T G C T A G T C G A T G C A C G A T A C G T A G C T G T A C G T A C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A