Information for 2-GGAAATCCCC (Motif 4)

C A T G C T A G C T G A C T G A C G T A C G A T A G T C T G A C A G T C G T A C
Reverse Opposite:
C A T G T A C G A C T G T C A G G C T A G C A T G A C T G A C T G A T C G T A C
p-value:1e-27
log p-value:-6.401e+01
Information Content per bp:1.668
Number of Target Sequences with motif74.0
Percentage of Target Sequences with motif9.65%
Number of Background Sequences with motif934.3
Percentage of Background Sequences with motif1.97%
Average Position of motif in Targets43.6 +/- 25.7bp
Average Position of motif in Background50.4 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:GGAAATCCCC
GGAAATCCCC
 C A T G C T A G C T G A C T G A C G T A C G A T A G T C T G A C A G T C G T A C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-GGAAATCCCC-
GGGAAATCCCCN
 A C G T C A T G C T A G C T G A C T G A C G T A C G A T A G T C T G A C A G T C G T A C A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:GGAAATCCCC
GGAAATTCCC
 C A T G C T A G C T G A C T G A C G T A C G A T A G T C T G A C A G T C G T A C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

REL/MA0101.1/Jaspar

Match Rank:4
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:GGAAATCCCC
GGAAANCCCC
 C A T G C T A G C T G A C T G A C G T A C G A T A G T C T G A C A G T C G T A C
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.93
Offset:0
Orientation:forward strand
Alignment:GGAAATCCCC
GGAAATTCCC
 C A T G C T A G C T G A C T G A C G T A C G A T A G T C T G A C A G T C G T A C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--GGAAATCCCC
GGGGGAATCCCC
 A C G T A C G T C A T G C T A G C T G A C T G A C G T A C G A T A G T C T G A C A G T C G T A C
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--GGAAATCCCC-
AGGGGAATCCCCT
 A C G T A C G T C A T G C T A G C T G A C T G A C G T A C G A T A G T C T G A C A G T C G T A C A C G T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--GGAAATCCCC-
AGGGGAATCCCCT
 A C G T A C G T C A T G C T A G C T G A C T G A C G T A C G A T A G T C T G A C A G T C G T A C A C G T
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:9
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GGAAATCCCC
NNTGGAAANN---
 A C G T A C G T A C G T C A T G C T A G C T G A C T G A C G T A C G A T A G T C T G A C A G T C G T A C
C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T A C G T A C G T A C G T

NFATC3/MA0625.1/Jaspar

Match Rank:10
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GGAAATCCCC
AATGGAAAAT---
 A C G T A C G T A C G T C A T G C T A G C T G A C T G A C G T A C G A T A G T C T G A C A G T C G T A C
C G T A C T G A G A C T T A C G C A T G T C G A C G T A G C T A C T G A G C A T A C G T A C G T A C G T