Information for 5-GGGACTTCCC (Motif 5)

C T A G C T A G A C T G T C G A G A T C A C G T A G C T A G T C G T A C A T G C
Reverse Opposite:
T A C G A C T G C T A G T C G A C G T A C T A G A G C T A G T C A G T C G A T C
p-value:1e-16
log p-value:-3.784e+01
Information Content per bp:1.812
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.48%
Number of Background Sequences with motif165.2
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets50.2 +/- 23.7bp
Average Position of motif in Background54.4 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--GGGACTTCCC
NGGGGATTTCCC
 A C G T A C G T C T A G C T A G A C T G T C G A G A T C A C G T A G C T A G T C G T A C A T G C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-GGGACTTCCC
GGGGATTTCC-
 A C G T C T A G C T A G A C T G T C G A G A T C A C G T A G C T A G T C G T A C A T G C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.82
Offset:0
Orientation:forward strand
Alignment:GGGACTTCCC
GGGGATTTCC
 C T A G C T A G A C T G T C G A G A T C A C G T A G C T A G T C G T A C A T G C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:4
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GGGACTTCCC--
GGGGATTCCCCC
 C T A G C T A G A C T G T C G A G A T C A C G T A G C T A G T C G T A C A T G C A C G T A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GGGACTTCCC
GGGAATTTCC
 C T A G C T A G A C T G T C G A G A T C A C G T A G C T A G T C G T A C A T G C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

NFKB2/MA0778.1/Jaspar

Match Rank:6
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--GGGACTTCCC-
AGGGGAATCCCCT
 A C G T A C G T C T A G C T A G A C T G T C G A G A T C A C G T A G C T A G T C G T A C A T G C A C G T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GGGACTTCCC
GGGAATTTCC
 C T A G C T A G A C T G T C G A G A T C A C G T A G C T A G T C G T A C A T G C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--GGGACTTCCC-
AGGGGATTCCCCT
 A C G T A C G T C T A G C T A G A C T G T C G A G A T C A C G T A G C T A G T C G T A C A T G C A C G T
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

PB0058.1_Sfpi1_1/Jaspar

Match Rank:9
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GGGACTTCCC-----
-NNACTTCCTCTTNN
 C T A G C T A G A C T G T C G A G A T C A C G T A G C T A G T C G T A C A T G C A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G C T A C T G A A T G C C G A T C G A T A G T C A G T C A C G T A G T C G C A T G C A T G C T A T C G A

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GGGACTTCCC---
---ACTTCCTGBT
 C T A G C T A G A C T G T C G A G A T C A C G T A G C T A G T C G T A C A T G C A C G T A C G T A C G T
A C G T A C G T A C G T C T G A A G T C A C G T A C G T A G T C A G T C A C G T A T C G A T C G G C A T