Information for 13-GCCTCTGTCG (Motif 25)

A C T G A G T C A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G
Reverse Opposite:
A G T C A C T G C G T A A G T C C G T A A C T G C G T A A C T G A C T G A G T C
p-value:1e-5
log p-value:-1.231e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.3 +/- 12.8bp
Average Position of motif in Background18.7 +/- 15.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCCTCTGTCG
-CCTTTGTT-
 A C T G A G T C A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCCTCTGTCG
NGCCTNAGGCN
 A C G T A C T G A G T C A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G
G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCCTCTGTCG
TGCCTGAGGCN
 A C G T A C T G A G T C A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T

TFAP2A/MA0003.3/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCCTCTGTCG
NGCCTGAGGCN
 A C G T A C T G A G T C A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCCTCTGTCG
AGGVNCCTTTGT--
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCCTCTGTCG
ACCATCTGTT-
 A C G T A C T G A G T C A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G
T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCCTCTGTCG
-CCWTTGTY-
 A C T G A G T C A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCCTCTGTCG--
NTNGCCTCAGGCNNN
 A C G T A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G A C G T A C G T
G C T A C A G T G A C T A T C G A G T C A G T C A G C T T A G C T C G A T C A G A C T G T A G C C G T A C G T A C G A T

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCCTCTGTCG-
-CCTTTGTTTT
 A C T G A G T C A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G A C G T
A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCCTCTGTCG
--CTTTGT--
 A C T G A G T C A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C T G
A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T