Information for 15-TRATGWCTGACAT (Motif 10)

C G A T C T G A C G T A A C G T A T C G C G A T A G T C C G A T A C T G C G T A A T G C C G T A A C G T
Reverse Opposite:
C G T A A C G T A T C G C G A T A G T C C G T A A C T G C G T A A T G C C G T A A C G T A G C T C G T A
p-value:1e-11
log p-value:-2.576e+01
Information Content per bp:1.910
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.6 +/- 16.5bp
Average Position of motif in Background60.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TRATGWCTGACAT-
--NTGATTGACAGN
 C G A T C T G A C G T A A C G T A T C G C G A T A G T C C G A T A C T G C G T A A T G C C G T A A C G T A C G T
A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TRATGWCTGACAT-
--BTGABTGACAGS
 C G A T C T G A C G T A A C G T A T C G C G A T A G T C C G A T A C T G C G T A A T G C C G T A A C G T A C G T
A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TRATGWCTGACAT--
---TGTCTGDCACCT
 C G A T C T G A C G T A A C G T A T C G C G A T A G T C C G A T A C T G C G T A A T G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TRATGWCTGACAT--
---TGAGTGACAGSC
 C G A T C T G A C G T A A C G T A T C G C G A T A G T C C G A T A C T G C G T A A T G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

MEIS1/MA0498.2/Jaspar

Match Rank:5
Score:0.63
Offset:6
Orientation:forward strand
Alignment:TRATGWCTGACAT
------TTGACAG
 C G A T C T G A C G T A A C G T A T C G C G A T A G T C C G A T A C T G C G T A A T G C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TRATGWCTGACAT--
NNTNNTGTCTGGNNTNG
 A C G T A C G T C G A T C T G A C G T A A C G T A T C G C G A T A G T C C G A T A C T G C G T A A T G C C G T A A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.61
Offset:6
Orientation:forward strand
Alignment:TRATGWCTGACAT-
------YTGWCADY
 C G A T C T G A C G T A A C G T A T C G C G A T A G T C C G A T A C T G C G T A A T G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TRATGWCTGACAT--
--CTGTCTGTCACCT
 C G A T C T G A C G T A A C G T A T C G C G A T A G T C C G A T A C T G C G T A A T G C C G T A A C G T A C G T A C G T
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PB0142.1_Jundm2_2/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TRATGWCTGACAT-
ATTGATGAGTCACCAA
 A C G T A C G T C G A T C T G A C G T A A C G T A T C G C G A T A G T C C G A T A C T G C G T A A T G C C G T A A C G T A C G T
T G C A C A G T A C G T C T A G T C G A A G C T A C T G G T C A A T C G G A C T T G A C C T G A A G T C G T A C C T G A G T C A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TRATGWCTGACAT-
----VGCTGWCAVB
 C G A T C T G A C G T A A C G T A T C G C G A T A G T C C G A T A C T G C G T A A T G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C