Information for 14-ATGAAAGGGA (Motif 38)

C G T A A C G T A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C A G T C A C G T A C G T A C G T A G T C C G T A A C G T
p-value:1e-3
log p-value:-8.891e+00
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif16.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets52.6 +/- 24.9bp
Average Position of motif in Background44.0 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ATGAAAGGGA
ACATCAAAGGNA
 A C G T A C G T C G T A A C G T A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A
C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

TCF7L2/MA0523.1/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----ATGAAAGGGA
AAAGATCAAAGGAA
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

PB0040.1_Lef1_1/Jaspar

Match Rank:3
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----ATGAAAGGGA--
NANAGATCAAAGGGNNN
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

PB0083.1_Tcf7_1/Jaspar

Match Rank:4
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----ATGAAAGGGA--
TATAGATCAAAGGAAAA
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T
A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:5
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----ATGAAAGGGA--
NNNAGATCAAAGGANNN
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

PB0082.1_Tcf3_1/Jaspar

Match Rank:6
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----ATGAAAGGGA--
TATAGATCAAAGGAAAA
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A

LEF1/MA0768.1/Jaspar

Match Rank:7
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----ATGAAAGGGA-
AAAGATCAAAGGGTT
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A A C G T
T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

PB0170.1_Sox17_2/Jaspar

Match Rank:8
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----ATGAAAGGGA--
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--ATGAAAGGGA
ACATCAAAGG--
 A C G T A C G T C G T A A C G T A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ATGAAAGGGA
AAAGATCAAAGG--
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A C G T A A C T G A C T G A C T G C G T A
C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G A C G T A C G T