Information for 8-GGGATTTCCC (Motif 3)

C T A G C A T G T C A G G C T A G A C T C G A T A G C T A G T C G A T C A T G C
Reverse Opposite:
T A C G C T A G T C A G C T G A G C T A C T G A C G A T A G T C G T A C G A T C
p-value:1e-17
log p-value:-3.926e+01
Information Content per bp:1.608
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif6.64%
Number of Background Sequences with motif689.5
Percentage of Background Sequences with motif1.47%
Average Position of motif in Targets55.0 +/- 26.1bp
Average Position of motif in Background49.3 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--GGGATTTCCC
NGGGGATTTCCC
 A C G T A C G T C T A G C A T G T C A G G C T A G A C T C G A T A G C T A G T C G A T C A T G C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-GGGATTTCCC
GGGGATTTCC-
 A C G T C T A G C A T G T C A G G C T A G A C T C G A T A G C T A G T C G A T C A T G C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-GGGATTTCCC
GGGGATTTCC-
 A C G T C T A G C A T G T C A G G C T A G A C T C G A T A G C T A G T C G A T C A T G C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-GGGATTTCCC
GGGAATTTCC-
 A C G T C T A G C A T G T C A G G C T A G A C T C G A T A G C T A G T C G A T C A T G C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:5
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-GGGATTTCCC-
GGGGATTCCCCC
 A C G T C T A G C A T G T C A G G C T A G A C T C G A T A G C T A G T C G A T C A T G C A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

NFKB2/MA0778.1/Jaspar

Match Rank:6
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--GGGATTTCCC-
AGGGGATTCCCCT
 A C G T A C G T C T A G C A T G T C A G G C T A G A C T C G A T A G C T A G T C G A T C A T G C A C G T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-GGGATTTCCC
GGGAATTTCC-
 A C G T C T A G C A T G T C A G G C T A G A C T C G A T A G C T A G T C G A T C A T G C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--GGGATTTCCC-
AGGGGATTCCCCT
 A C G T A C G T C T A G C A T G T C A G G C T A G A C T C G A T A G C T A G T C G A T C A T G C A C G T
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GGGATTTCCC---
---HTTTCCCASG
 C T A G C A T G T C A G G C T A G A C T C G A T A G C T A G T C G A T C A T G C A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

NFATC1/MA0624.1/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GGGATTTCCC--
--ATTTTCCATT
 C T A G C A T G T C A G G C T A G A C T C G A T A G C T A G T C G A T C A T G C A C G T A C G T
A C G T A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T