Information for 11-ATGGGATATAGCC (Motif 13)

T C G A A C G T A C T G A C T G A C T G C G T A C G A T C G T A A C G T G T C A A T C G A G T C A G T C
Reverse Opposite:
A C T G A C T G A T G C A C G T C G T A A C G T C G T A A C G T A G T C A G T C A G T C C G T A A C G T
p-value:1e-11
log p-value:-2.556e+01
Information Content per bp:1.930
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets73.4 +/- 17.4bp
Average Position of motif in Background39.1 +/- 2.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0163.1_Six6_2/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:ATGGGATATAGCC----
ATGGGATATATCCGCCT
 T C G A A C G T A C T G A C T G A C T G C G T A C G A T C G T A A C G T G T C A A T C G A G T C A G T C A C G T A C G T A C G T A C G T
T G C A C G A T A T C G T A C G A C T G T C G A G A C T C T G A A C G T G T C A A G C T G T A C A G T C T C A G G A T C G A T C C A G T

PB0098.1_Zfp410_1/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----ATGGGATATAGCC
TATTATGGGATGGATAA
 A C G T A C G T A C G T A C G T T C G A A C G T A C T G A C T G A C T G C G T A C G A T C G T A A C G T G T C A A T C G A G T C A G T C
C G A T T C G A C A G T C G A T G T C A C G A T C A T G C A T G C A T G C T G A C A G T C T A G A C T G T G C A C A G T C G T A T G C A

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:ATGGGATATAGCC
---GGAAATTCCC
 T C G A A C G T A C T G A C T G A C T G C G T A C G A T C G T A A C G T G T C A A T C G A G T C A G T C
A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:ATGGGATATAGCC-
--GGGAAATCCCCN
 T C G A A C G T A C T G A C T G A C T G C G T A C G A T C G T A A C G T G T C A A T C G A G T C A G T C A C G T
A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-ATGGGATATAGCC
CSTGGGAAAD----
 A C G T T C G A A C G T A C T G A C T G A C T G C G T A C G A T C G T A A C G T G T C A A T C G A G T C A G T C
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T A C G T A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:6
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------ATGGGATATAGCC
RGSMTBCTGGGAAAT----
 A C G T A C G T A C G T A C G T A C G T A C G T T C G A A C G T A C T G A C T G A C T G C G T A C G A T C G T A A C G T G T C A A T C G A G T C A G T C
C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T A C G T A C G T A C G T A C G T

ZNF410/MA0752.1/Jaspar

Match Rank:7
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------ATGGGATATAGCC
GANTATTATGGGATGGA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A C G T A C T G A C T G A C T G C G T A C G A T C G T A A C G T G T C A A T C G A G T C A G T C
C A T G T C G A C A T G G A C T C T G A A G C T A C G T C T G A C A G T A T C G A C T G C A T G G T C A C G A T C T A G A C T G T G C A A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:ATGGGATATAGCC
---GGAAATCCCC
 T C G A A C G T A C T G A C T G A C T G C G T A C G A T C G T A A C G T G T C A A T C G A G T C A G T C
A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

PB0181.1_Spdef_2/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---ATGGGATATAGCC
CTACTAGGATGTNNTN
 A C G T A C G T A C G T T C G A A C G T A C T G A C T G A C T G C G T A C G A T C G T A A C G T G T C A A T C G A G T C A G T C
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C

RELA/MA0107.1/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:ATGGGATATAGCC
---GGAAATTCCC
 T C G A A C G T A C T G A C T G A C T G C G T A C G A T C G T A A C G T G T C A A T C G A G T C A G T C
A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C