Information for 8-GTGGCAGCCT (Motif 6)

C T A G A G C T C T A G A C T G T G A C C T G A A C T G G T A C G A T C C A G T
Reverse Opposite:
G T C A C T A G C A T G G T A C A G C T A C T G T G A C A G T C T C G A A G T C
p-value:1e-11
log p-value:-2.705e+01
Information Content per bp:1.828
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.92%
Number of Background Sequences with motif218.4
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets59.1 +/- 19.0bp
Average Position of motif in Background48.5 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GTGGCAGCCT
AGGTGHCAGACA
 A C G T A C G T C T A G A G C T C T A G A C T G T G A C C T G A A C T G G T A C G A T C C A G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GTGGCAGCCT-
AGGTGNCAGACAG
 A C G T A C G T C T A G A G C T C T A G A C T G T G A C C T G A A C T G G T A C G A T C C A G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GTGGCAGCCT
VBTGWCAGCB-
 A C G T C T A G A G C T C T A G A C T G T G A C C T G A A C T G G T A C G A T C C A G T
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GTGGCAGCCT---
ACTATGCCAACCTACC
 A C G T A C G T A C G T C T A G A G C T C T A G A C T G T G A C C T G A A C T G G T A C G A T C C A G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GTGGCAGCCT
GGTTGGCAT---
 A C G T A C G T C T A G A G C T C T A G A C T G T G A C C T G A A C T G G T A C G A T C C A G T
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GTGGCAGCCT-----
-TGGCAGNCTGCCAG
 C T A G A G C T C T A G A C T G T G A C C T G A A C T G G T A C G A T C C A G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GTGGCAGCCT
TTGCCAAG--
 C T A G A G C T C T A G A C T G T G A C C T G A A C T G G T A C G A T C C A G T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTGGCAGCCT
NTTGGCANN--
 A C G T C T A G A G C T C T A G A C T G T G A C C T G A A C T G G T A C G A T C C A G T
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GTGGCAGCCT
TTGGCA----
 C T A G A G C T C T A G A C T G T G A C C T G A A C T G G T A C G A T C C A G T
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

CREB3L1/MA0839.1/Jaspar

Match Rank:10
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------GTGGCAGCCT
TGATGACGTGGCAN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G C T C T A G A C T G T G A C C T G A A C T G G T A C G A T C C A G T
G A C T C T A G T C G A G A C T A C T G G C T A A G T C A T C G A G C T C T A G C A T G G A T C C T G A A G C T A C G T A C G T A C G T