Information for 23-AGATGTTAAT (Motif 39)

C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T C G T A C G T A A G T C C G T A A C G T A T G C A C G T
p-value:1e-2
log p-value:-5.529e+00
Information Content per bp:1.959
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.28%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.2 +/- 24.1bp
Average Position of motif in Background27.3 +/- 22.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:AGATGTTAAT
AGGTGTTAAT
 C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.75
Offset:1
Orientation:forward strand
Alignment:AGATGTTAAT---
-TATGCWAATBAV
 C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Arid3b/MA0601.1/Jaspar

Match Rank:3
Score:0.72
Offset:2
Orientation:forward strand
Alignment:AGATGTTAAT---
--ATATTAATTAA
 C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

POU3F1/MA0786.1/Jaspar

Match Rank:4
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AGATGTTAAT--
TTATGCAAATTA
 C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AGATGTTAAT---
-WATGCAAATGAG
 C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

POU3F2/MA0787.1/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGATGTTAAT--
TTATGCAAATTA
 C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

PH0085.1_Irx4/Jaspar

Match Rank:7
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----AGATGTTAAT--
AATATACATGTAAAACA
 A C G T A C G T A C G T A C G T A C G T C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A

POU5F1B/MA0792.1/Jaspar

Match Rank:8
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGATGTTAAT
-TATGCAAAT
 C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T
A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

POU3F3/MA0788.1/Jaspar

Match Rank:9
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AGATGTTAAT--
ATTATGCTAATTT
 A C G T C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T
C G T A C G A T C G A T C G T A A C G T C A T G A G T C G C A T C G T A C T G A G C A T C G A T C G A T

POU2F1/MA0785.1/Jaspar

Match Rank:10
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AGATGTTAAT-
AATATGCAAATT
 A C G T C G T A A T C G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C G T
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T