Information for 12-CTTTGCGTGC (Motif 10)

G T A C G A C T A C G T A C G T C T A G A G T C C T A G A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A G T C A C T G A G T C C G T A G T C A C G T A A C T G
p-value:1e-14
log p-value:-3.405e+01
Information Content per bp:1.880
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.75%
Number of Background Sequences with motif33.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets53.4 +/- 25.5bp
Average Position of motif in Background56.8 +/- 33.5bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:CTTTGCGTGC--
--TTGCGTGCVA
 G T A C G A C T A C G T A C G T C T A G A G T C C T A G A C G T A C T G A G T C A C G T A C G T
A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.77
Offset:3
Orientation:forward strand
Alignment:CTTTGCGTGC
---TGCGTG-
 G T A C G A C T A C G T A C G T C T A G A G T C C T A G A C G T A C T G A G T C
A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.71
Offset:3
Orientation:forward strand
Alignment:CTTTGCGTGC-
---TACGTGCV
 G T A C G A C T A C G T A C G T C T A G A G T C C T A G A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CTTTGCGTGC
--RTACGTGC
 G T A C G A C T A C G T A C G T C T A G A G T C C T A G A C G T A C T G A G T C
A C G T A C G T C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C

PB0208.1_Zscan4_2/Jaspar

Match Rank:5
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CTTTGCGTGC----
NNNNTTGTGTGCTTNN
 A C G T A C G T G T A C G A C T A C G T A C G T C T A G A G T C C T A G A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTTTGCGTGC
--GGACGTGC
 G T A C G A C T A C G T A C G T C T A G A G T C C T A G A C G T A C T G A G T C
A C G T A C G T T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C

Hes1/MA1099.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTTTGCGTGC-
-NNCGCGTGNN
 G T A C G A C T A C G T A C G T C T A G A G T C C T A G A C G T A C T G A G T C A C G T
A C G T C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTTTGCGTGC----
CCATTGTATGCAAAT
 A C G T G T A C G A C T A C G T A C G T C T A G A G T C C T A G A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTTTGCGTGC
GGGTACGTGC
 G T A C G A C T A C G T A C G T C T A G A G T C C T A G A C G T A C T G A G T C
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTTTGCGTGC--
-CTTGAGTGGCT
 G T A C G A C T A C G T A C G T C T A G A G T C C T A G A C G T A C T G A G T C A C G T A C G T
A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T