Information for 4-GCAGGCACCCYAA (Motif 6)

A T C G A T G C C G T A A C T G A C T G A T G C C G T A A G T C A G T C G T A C A G C T T C G A C G T A
Reverse Opposite:
C G A T A G C T T C G A A C T G A C T G A C T G A C G T A T C G A G T C A G T C A C G T A T C G A T G C
p-value:1e-13
log p-value:-3.121e+01
Information Content per bp:1.831
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif7.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets66.7 +/- 18.9bp
Average Position of motif in Background61.6 +/- 13.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0052.1_Plagl1_1/Jaspar

Match Rank:1
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCAGGCACCCYAA-
TTGGGGGCGCCCCTAG
 A C G T A C G T A T C G A T G C C G T A A C T G A C T G A T G C C G T A A G T C A G T C G T A C A G C T T C G A C G T A A C G T
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCAGGCACCCYAA
CCAGGAACAG---
 A T C G A T G C C G T A A C T G A C T G A T G C C G T A A G T C A G T C G T A C A G C T T C G A C G T A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGCACCCYAA
GGTTGGCAT-----
 A C G T A T C G A T G C C G T A A C T G A C T G A T G C C G T A A G T C A G T C G T A C A G C T T C G A C G T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGCACCCYAA
NGTGGGCAT-----
 A C G T A T C G A T G C C G T A A C T G A C T G A T G C C G T A A G T C A G T C G T A C A G C T T C G A C G T A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCAGGCACCCYAA
TBGCACGCAA-----
 A C G T A C G T A T C G A T G C C G T A A C T G A C T G A T G C C G T A A G T C A G T C G T A C A G C T T C G A C G T A
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T

PB0156.1_Plagl1_2/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGCACCCYAA---
NNNNGGTACCCCCCANN
 A C G T A T C G A T G C C G T A A C T G A C T G A T G C C G T A A G T C A G T C G T A C A G C T T C G A C G T A A C G T A C G T A C G T
G C T A C T G A C T A G C A T G C A T G C A T G G A C T C G T A A G T C T A G C A G T C A G T C G A T C G A T C C G T A T A C G G A T C

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:7
Score:0.54
Offset:-8
Orientation:forward strand
Alignment:--------GCAGGCACCCYAA
AAGGKGRCGCAGGCA------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C C G T A A C T G A C T G A T G C C G T A A G T C A G T C G T A C A G C T T C G A C G T A
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCAGGCACCCYAA
CCAGACRSVB---
 A T C G A T G C C G T A A C T G A C T G A T G C C G T A A G T C A G T C G T A C A G C T T C G A C G T A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCAGGCACCCYAA---
CGAAGCACACAAAATA
 A T C G A T G C C G T A A C T G A C T G A T G C C G T A A G T C A G T C G T A C A G C T T C G A C G T A A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Spz1/MA0111.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCAGGCACCCYAA
GCTGTTACCCT--
 A T C G A T G C C G T A A C T G A C T G A T G C C G T A A G T C A G T C G T A C A G C T T C G A C G T A
A C T G T G A C A G C T A T C G G C A T C G A T G C T A G T A C A G T C T A G C A G C T A C G T A C G T