Information for 19-TSATGMATGCMTR (Motif 27)

A C G T A T G C C G T A A C G T A C T G G T A C C G T A A C G T A C T G G T A C G T C A A C G T C T A G
Reverse Opposite:
A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G G T A C C G T A A C G T A T C G G T C A
p-value:1e-6
log p-value:-1.473e+01
Information Content per bp:1.870
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets28.2 +/- 16.1bp
Average Position of motif in Background69.4 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TSATGMATGCMTR
NNTNTCATGAATGT---
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A C G T A C T G G T A C C G T A A C G T A C T G G T A C G T C A A C G T C T A G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TSATGMATGCMTR-
GTCATGCHTGRCTGS
 A C G T A C G T A T G C C G T A A C G T A C T G G T A C C G T A A C G T A C T G G T A C G T C A A C G T C T A G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PB0028.1_Hbp1_1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TSATGMATGCMTR--
ACTATGAATGAATGAT
 A C G T A C G T A T G C C G T A A C G T A C T G G T A C C G T A A C G T A C T G G T A C G T C A A C G T C T A G A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TSATGMATGCMTR-
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A T G C C G T A A C G T A C T G G T A C C G T A A C G T A C T G G T A C G T C A A C G T C T A G A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TSATGMATGCMTR
ATGATKGATGRC--
 A C G T A C G T A T G C C G T A A C G T A C T G G T A C C G T A A C G T A C T G G T A C G T C A A C G T C T A G
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TSATGMATGCMTR
TNNATTATGCATANNTT
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A C G T A C T G G T A C C G T A A C G T A C T G G T A C G T C A A C G T C T A G
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

PAX1/MA0779.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TSATGMATGCMTR--
CGTCACGCATGACTGCA
 A C G T A C G T A C G T A T G C C G T A A C G T A C T G G T A C C G T A A C G T A C T G G T A C G T C A A C G T C T A G A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

PAX9/MA0781.1/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TSATGMATGCMTR--
CGTCACGCATGACTGCA
 A C G T A C G T A C G T A T G C C G T A A C G T A C T G G T A C C G T A A C G T A C T G G T A C G T C A A C G T C T A G A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TSATGMATGCMTR
TGATTGATGA---
 A C G T A T G C C G T A A C G T A C T G G T A C C G T A A C G T A C T G G T A C G T C A A C G T C T A G
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TSATGMATGCMTR
TGATTRATGGCY-
 A C G T A T G C C G T A A C G T A C T G G T A C C G T A A C G T A C T G G T A C G T C A A C G T C T A G
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C A C G T