Information for 6-GGGGAATTCC (Motif 13)

C A T G T A C G A T C G C T A G T G C A G T C A A G C T A G C T A G T C A G T C
Reverse Opposite:
C T A G T C A G T C G A T C G A C A G T A C G T A G T C T A G C A T G C G T A C
p-value:1e-12
log p-value:-2.779e+01
Information Content per bp:1.607
Number of Target Sequences with motif72.0
Percentage of Target Sequences with motif8.14%
Number of Background Sequences with motif1486.2
Percentage of Background Sequences with motif3.16%
Average Position of motif in Targets48.9 +/- 28.3bp
Average Position of motif in Background49.1 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-GGGGAATTCC-
NGGGGATTTCCC
 A C G T C A T G T A C G A T C G C T A G T G C A G T C A A G C T A G C T A G T C A G T C A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.86
Offset:0
Orientation:forward strand
Alignment:GGGGAATTCC
GGGGATTTCC
 C A T G T A C G A T C G C T A G T G C A G T C A A G C T A G C T A G T C A G T C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.84
Offset:0
Orientation:forward strand
Alignment:GGGGAATTCC
GGGGATTTCC
 C A T G T A C G A T C G C T A G T G C A G T C A A G C T A G C T A G T C A G T C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.82
Offset:0
Orientation:forward strand
Alignment:GGGGAATTCC
GGGAATTTCC
 C A T G T A C G A T C G C T A G T G C A G T C A A G C T A G C T A G T C A G T C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

NFKB2/MA0778.1/Jaspar

Match Rank:5
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-GGGGAATTCC--
AGGGGAATCCCCT
 A C G T C A T G T A C G A T C G C T A G T G C A G T C A A G C T A G C T A G T C A G T C A C G T A C G T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:GGGGAATTCC
GGGAATTTCC
 C A T G T A C G A T C G C T A G T G C A G T C A A G C T A G C T A G T C A G T C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-GGGGAATTCC-
GGGGGAATCCCC
 A C G T C A T G T A C G A T C G C T A G T G C A G T C A A G C T A G C T A G T C A G T C A C G T
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GGGGAATTCC--
AGGGGAATCCCCT
 A C G T C A T G T A C G A T C G C T A G T G C A G T C A A G C T A G C T A G T C A G T C A C G T A C G T
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

MZF1/MA0056.1/Jaspar

Match Rank:9
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GGGGAATTCC
TGGGGA-----
 A C G T C A T G T A C G A T C G C T A G T G C A G T C A A G C T A G C T A G T C A G T C
A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T

PB0204.1_Zfp740_2/Jaspar

Match Rank:10
Score:0.65
Offset:-8
Orientation:reverse strand
Alignment:--------GGGGAATTCC
ANTNCCGGGGGGAANTT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G T A C G A T C G C T A G T G C A G T C A A G C T A G C T A G T C A G T C
C T G A A G T C G A C T G A C T T A G C A T G C T A C G T A C G A C T G C T A G C T A G C T A G C G T A G T C A G A C T G A C T G A C T A C G T