Information for 17-TTTGGCAGCTTCT (Motif 20)

A G C T A C G T A C G T A C T G A C T G A G T C C G T A C T A G A G T C A C G T A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G G T C A C G T A A C T G A G T C A C G T A C T G A G T C A G T C C G T A G T C A C T G A
p-value:1e-9
log p-value:-2.165e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.0 +/- 22.1bp
Average Position of motif in Background76.9 +/- 14.7bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0170.1_Tgif2/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TTTGGCAGCTTCT-
GTATTGACAGCTNNTT
 A C G T A C G T A G C T A C G T A C G T A C T G A C T G A G T C C G T A C T A G A G T C A C G T A C G T A G T C A C G T A C G T
A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTTGGCAGCTTCT
NNTTGGCANN----
 A C G T A G C T A C G T A C G T A C T G A C T G A G T C C G T A C T A G A G T C A C G T A C G T A G T C A C G T
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:3
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:TTTGGCAGCTTCT
---AGCAGCTGCT
 A G C T A C G T A C G T A C T G A C T G A G T C C G T A C T A G A G T C A C G T A C G T A G T C A C G T
A C G T A C G T A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T

PB0003.1_Ascl2_1/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TTTGGCAGCTTCT----
CTCAGCAGCTGCTACTG
 A G C T A C G T A C G T A C T G A C T G A G T C C G T A C T A G A G T C A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

PH0102.1_Meis1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TTTGGCAGCTTCT-
NTATTGACAGCTNNTT
 A C G T A C G T A G C T A C G T A C G T A C T G A C T G A G T C C G T A C T A G A G T C A C G T A C G T A G T C A C G T A C G T
C T A G A C G T C G T A C G A T A C G T A C T G C G T A A G T C C T G A A C T G A T G C G A C T T A G C A T C G G C A T G C A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TTTGGCAGCTTCT
CTTGGCAA-----
 A G C T A C G T A C G T A C T G A C T G A G T C C G T A C T A G A G T C A C G T A C G T A G T C A C G T
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TTTGGCAGCTTCT
NTTGGCANN----
 A G C T A C G T A C G T A C T G A C T G A G T C C G T A C T A G A G T C A C G T A C G T A G T C A C G T
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TTTGGCAGCTTCT
-TTGGCA------
 A G C T A C G T A C G T A C T G A C T G A G T C C G T A C T A G A G T C A C G T A C G T A G T C A C G T
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0105.1_Meis3/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TTTGGCAGCTTCT-
GTATTGACAGGTNNTT
 A C G T A C G T A G C T A C G T A C G T A C T G A C T G A G T C C G T A C T A G A G T C A C G T A C G T A G T C A C G T A C G T
C A T G A C G T C G T A C G A T G A C T A C T G C G T A A G T C C T G A C T A G T A C G G A C T T G C A G C T A G A C T G C A T

PH0104.1_Meis2/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TTTGGCAGCTTCT-
NTATTGACAGGTNNTN
 A C G T A C G T A G C T A C G T A C G T A C T G A C T G A G T C C G T A C T A G A G T C A C G T A C G T A G T C A C G T A C G T
C T A G C A G T G C T A C G A T G A C T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A G C T G C A T C G A T