Information for 4-SNGGGGRTTTCCC (Motif 4)

T A C G A G C T C T A G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C
Reverse Opposite:
C T A G C T A G T C A G T C G A T G C A C G T A A G C T G A T C G T A C A G T C G A T C T C G A A T G C
p-value:1e-27
log p-value:-6.444e+01
Information Content per bp:1.613
Number of Target Sequences with motif70.0
Percentage of Target Sequences with motif8.63%
Number of Background Sequences with motif767.6
Percentage of Background Sequences with motif1.64%
Average Position of motif in Targets49.6 +/- 25.0bp
Average Position of motif in Background48.9 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.95
Offset:1
Orientation:forward strand
Alignment:SNGGGGRTTTCCC
-NGGGGATTTCCC
 T A C G A G C T C T A G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C
A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.92
Offset:2
Orientation:forward strand
Alignment:SNGGGGRTTTCCC
--GGGGATTTCC-
 T A C G A G C T C T A G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C
A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:3
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:SNGGGGRTTTCCC-
-AGGGGAATCCCCT
 T A C G A G C T C T A G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C A C G T
A C G T T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

REL/MA0101.1/Jaspar

Match Rank:4
Score:0.88
Offset:2
Orientation:forward strand
Alignment:SNGGGGRTTTCCC
--GGGGATTTCC-
 T A C G A G C T C T A G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C
A C G T A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.88
Offset:2
Orientation:forward strand
Alignment:SNGGGGRTTTCCC
--GGGAATTTCC-
 T A C G A G C T C T A G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C
A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:SNGGGGRTTTCCC-
--GGGGATTCCCCC
 T A C G A G C T C T A G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C A C G T
A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

NFKB1/MA0105.4/Jaspar

Match Rank:7
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:SNGGGGRTTTCCC-
-AGGGGATTCCCCT
 T A C G A G C T C T A G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C A C G T
A C G T T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.83
Offset:2
Orientation:reverse strand
Alignment:SNGGGGRTTTCCC
--GGGAATTTCC-
 T A C G A G C T C T A G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C
A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

PB0201.1_Zfp281_2/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----SNGGGGRTTTCCC
NNNATTGGGGGTNTCCT
 A C G T A C G T A C G T A C G T T A C G A G C T C T A G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C
A G T C G C T A G C T A G C T A C G A T C G A T A C T G A C T G A C T G C A T G A C T G A G C T G T A C G C A T G T A C G T A C G C A T

MZF1/MA0056.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:SNGGGGRTTTCCC
-TGGGGA------
 T A C G A G C T C T A G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C
A C G T A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T