Information for 17-GTTTTGTGGC (Motif 15)

A C T G A G C T C G A T A C G T A C G T A C T G A C G T A C T G A C T G A G T C
Reverse Opposite:
C T A G G T A C A G T C C G T A A G T C C G T A C G T A C G T A T C G A A G T C
p-value:1e-10
log p-value:-2.329e+01
Information Content per bp:1.908
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.73%
Number of Background Sequences with motif72.6
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets54.7 +/- 29.4bp
Average Position of motif in Background51.5 +/- 36.7bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GTTTTGTGGC---
-NNHTGTGGTTWN
 A C T G A G C T C G A T A C G T A C G T A C T G A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

RUNX1/MA0002.2/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GTTTTGTGGC--
-GTCTGTGGTTT
 A C T G A G C T C G A T A C G T A C G T A C T G A C G T A C T G A C T G A G T C A C G T A C G T
A C G T A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GTTTTGTGGC--
-TTTTATGGCTN
 A C T G A G C T C G A T A C G T A C G T A C T G A C G T A C T G A C T G A G T C A C G T A C G T
A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GTTTTGTGGC
NTTTTATGAC
 A C T G A G C T C G A T A C G T A C G T A C T G A C G T A C T G A C T G A G T C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GTTTTGTGGC--
--NNTGTGGTTT
 A C T G A G C T C G A T A C G T A C G T A C T G A C G T A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T

PH0064.1_Hoxb9/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GTTTTGTGGC---
NGANTTTTATGGCTCN
 A C G T A C G T A C G T A C T G A G C T C G A T A C G T A C G T A C T G A C G T A C T G A C T G A G T C A C G T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

RUNX3/MA0684.1/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GTTTTGTGGC--
--TTTGCGGTTT
 A C T G A G C T C G A T A C G T A C G T A C T G A C G T A C T G A C T G A G T C A C G T A C G T
A C G T A C G T C G A T A G C T A C G T T A C G A G T C A T C G A C T G A C G T A G C T C G A T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GTTTTGTGGC
CCATTGTTNY
 A C T G A G C T C G A T A C G T A C G T A C T G A C G T A C T G A C T G A G T C
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GTTTTGTGGC-
TGATTTATGGCC
 A C G T A C T G A G C T C G A T A C G T A C G T A C T G A C G T A C T G A C T G A G T C A C G T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTTTTGTGGC-
DGWTTTATGRCN
 A C G T A C T G A G C T C G A T A C G T A C G T A C T G A C G T A C T G A C T G A G T C A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C