Information for 25-TTTGTTGGCAGAA (Motif 32)

A C G T A C G T A C G T A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C A C G T A C T G A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A
p-value:1e-5
log p-value:-1.266e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.8 +/- 25.3bp
Average Position of motif in Background48.8 +/- 7.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TTTGTTGGCAGAA
--NNTTGGCANN-
 A C G T A C G T A C G T A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C T G C G T A C G T A
A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TTTGTTGGCAGAA
---CTTGGCAA--
 A C G T A C G T A C G T A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C T G C G T A C G T A
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.64
Offset:4
Orientation:forward strand
Alignment:TTTGTTGGCAGAA
----TTGGCA---
 A C G T A C G T A C G T A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C T G C G T A C G T A
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TTTGTTGGCAGAA
--GGTTGGCAT--
 A C G T A C G T A C G T A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C T G C G T A C G T A
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TTTGTTGGCAGAA
---NTTGGCANN-
 A C G T A C G T A C G T A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C T G C G T A C G T A
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TTTGTTGGCAGAA-
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C T G C G T A C G T A A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

THAP1/MA0597.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TTTGTTGGCAGAA
--TNNGGGCAG--
 A C G T A C G T A C G T A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C T G C G T A C G T A
A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TTTGTTGGCAGAA
NTTTTATTGG-----
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C T G C G T A C G T A
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TTTGTTGGCAGAA
ATTGTT-------
 A C G T A C G T A C G T A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C T G C G T A C G T A
G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TTTGTTGGCAGAA
CCATTGTATGCAAAT
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C T G A C T G A G T C C G T A A C T G C G T A C G T A
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T