Information for 18-GGTCAGGCAG (Motif 28)

A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T C T A G G T A C G T A C A C G T A C T G C G T A A G T C A G T C
p-value:1e-8
log p-value:-1.880e+01
Information Content per bp:1.926
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets54.4 +/- 33.6bp
Average Position of motif in Background52.8 +/- 17.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GGTCAGGCAG
AGGTCA-----
 A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C C G T A A C T G
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GGTCAGGCAG
AGRGGTCA-----
 A C G T A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C C G T A A C T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:3
Score:0.68
Offset:-7
Orientation:forward strand
Alignment:-------GGTCAGGCAG
CGCGCCGGGTCACGTA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C C G T A A C T G
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A A C G T

ESR2/MA0258.2/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GGTCAGGCAG----
AGGTCACCCTGACCT
 A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GGTCAGGCAG
TRAGGTCA-----
 A C G T A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C C G T A A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GGTCAGGCAG
ATCAAGGTCA-----
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C C G T A A C T G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:7
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------GGTCAGGCAG
AGAGCGGGGTCAAGTA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C C G T A A C T G
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GGTCAGGCAG-------
NGAGGTCANNGAGTTCANNN
 A C G T A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GGTCAGGCAG
CAAAGGTCAG----
 A C G T A C G T A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C C G T A A C T G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GGTCAGGCAG
AGTCACGC--
 A C T G A C T G A C G T A G T C C G T A A C T G A C T G A G T C C G T A A C T G
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T