Information for 25-TGCATGCATGCAT (Motif 34)

A C G T C T A G G A T C C G T A A G C T A C T G G T A C C G T A A C G T A C T G G T A C C G T A A C G T
Reverse Opposite:
G T C A A C G T A C T G T A G C G T C A A C G T C A T G G T A C C T G A A C G T C A T G G A T C C G T A
p-value:1e-3
log p-value:-7.086e+00
Information Content per bp:1.750
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.36%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets75.6 +/- 18.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----TGCATGCATGCAT
ACTATGAATGAATGAT-
 A C G T A C G T A C G T A C G T A C G T C T A G G A T C C G T A A G C T A C T G G T A C C G T A A C G T A C T G G T A C C G T A A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGCATGCATGCAT---
NNNNTGAATTCANNNC
 A C G T C T A G G A T C C G T A A G C T A C T G G T A C C G T A A C G T A C T G G T A C C G T A A C G T A C G T A C G T A C G T
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

PH0148.1_Pou3f3/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TGCATGCATGCAT------
--AAAATATGCATAATAAA
 A C G T C T A G G A T C C G T A A G C T A C T G G T A C C G T A A C G T A C T G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TGCATGCATGCAT--
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T C T A G G A T C C G T A A G C T A C T G G T A C C G T A A C G T A C T G G T A C C G T A A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TGCATGCATGCAT
NNTNTCATGAATGT--
 A C G T A C G T A C G T A C G T C T A G G A T C C G T A A G C T A C T G G T A C C G T A A C G T A C T G G T A C C G T A A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.57
Offset:7
Orientation:forward strand
Alignment:TGCATGCATGCAT----
-------ATGMATATDC
 A C G T C T A G G A T C C G T A A G C T A C T G G T A C C G T A A C G T A C T G G T A C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Pax6/MA0069.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TGCATGCATGCAT-
TTCACGCATGAGTT
 A C G T C T A G G A T C C G T A A G C T A C T G G T A C C G T A A C G T A C T G G T A C C G T A A C G T A C G T
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

PH0087.1_Irx6/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----TGCATGCATGCAT
AAAATACATGTAAAAAT
 A C G T A C G T A C G T A C G T A C G T C T A G G A T C C G T A A G C T A C T G G T A C C G T A A C G T A C T G G T A C C G T A A C G T
G C T A G C T A G C T A C T G A C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G T C A C G T A C G T A G C T A C G A T

PH0082.1_Irx2/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TGCATGCATGCAT
ANTNTTACATGTATNTA-
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G G A T C C G T A A G C T A C T G G T A C C G T A A C G T A C T G G T A C C G T A A C G T
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A A C G T

PH0083.1_Irx3_1/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TGCATGCATGCAT
ANTATTACATGTANNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G G A T C C G T A A G C T A C T G G T A C C G T A A C G T A C T G G T A C C G T A A C G T
G C T A C T A G G C A T G C T A A C G T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A A G C T G C A T G A C T G C A T A C G T