Information for 20-CACTTCGAAA (Motif 25)

A G T C C G T A A G T C A C G T C G A T A G T C A C T G C G T A C G T A C G T A
Reverse Opposite:
C G A T A C G T A C G T G T A C T A C G C G T A C G T A A C T G A C G T A C T G
p-value:1e-9
log p-value:-2.240e+01
Information Content per bp:1.879
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets45.2 +/- 25.7bp
Average Position of motif in Background60.7 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-3/MA0672.1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CACTTCGAAA
ACCACTTGAA--
 A C G T A C G T A G T C C G T A A G T C A C G T C G A T A G T C A C T G C G T A C G T A C G T A
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CACTTCGAAA
CCACTTGAA--
 A C G T A G T C C G T A A G T C A C G T C G A T A G T C A C T G C G T A C G T A C G T A
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CACTTCGAAA--
ATAACCACTTGAAAATT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C G T C G A T A G T C A C T G C G T A C G T A C G T A A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CACTTCGAAA
MRSCACTYAA---
 A C G T A C G T A C G T A G T C C G T A A G T C A C G T C G A T A G T C A C T G C G T A C G T A C G T A
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CACTTCGAAA
ACCACTTAA---
 A C G T A C G T A G T C C G T A A G T C A C G T C G A T A G T C A C T G C G T A C G T A C G T A
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CACTTCGAAA---
---TTTGAAACCG
 A G T C C G T A A G T C A C G T C G A T A G T C A C T G C G T A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

Nkx3-1/MA0124.2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CACTTCGAAA
ACCACTTAA---
 A C G T A C G T A G T C C G T A A G T C A C G T C G A T A G T C A C T G C G T A C G T A C G T A
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CACTTCGAAA-
TAAGCCACTTGAAATT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C G T C G A T A G T C A C T G C G T A C G T A C G T A A C G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

PH0114.1_Nkx2-5/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CACTTCGAAA-
TAAGCCACTTGAATTT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C G T C G A T A G T C A C T G C G T A C G T A C G T A A C G T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

PH0004.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CACTTCGAAA-
CATAACCACTTAACAAC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C G T C G A T A G T C A C T G C G T A C G T A C G T A A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C