Information for 11-AAACTAGAGA (Motif 13)

C G T A C G T A C G T A A G T C A C G T C G T A A C T G C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A G T C A C G T C G T A A C T G A C G T A C G T A C G T
p-value:1e-5
log p-value:-1.305e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.8 +/- 29.4bp
Average Position of motif in Background49.3 +/- 16.4bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AAACTAGAGA-
GWAAYHTGAKMC
 A C G T C G T A C G T A C G T A A G T C A C G T C G T A A C T G C G T A A C T G C G T A A C G T
C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AAACTAGAGA
DCYAAAAATAGM--
 A C G T A C G T A C G T A C G T C G T A C G T A C G T A A G T C A C G T C G T A A C T G C G T A A C T G C G T A
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:3
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------AAACTAGAGA
ATGCTAAAAATAGAA-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A A G T C A C G T C G T A A C T G C G T A A C T G C G T A
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AAACTAGAGA
CCAAAAATAG---
 A C G T A C G T A C G T C G T A C G T A C G T A A G T C A C G T C G T A A C T G C G T A A C T G C G T A
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----AAACTAGAGA--
GANGTTAACTAGTTTNN
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A A G T C A C G T C G T A A C T G C G T A A C T G C G T A A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

HMBOX1/MA0895.1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AAACTAGAGA
GTTAACTAGN--
 A C G T A C G T C G T A C G T A C G T A A G T C A C G T C G T A A C T G C G T A A C T G C G T A
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AAACTAGAGA
-AATTAGTG-
 C G T A C G T A C G T A A G T C A C G T C G T A A C T G C G T A A C T G C G T A
A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AAACTAGAGA-
AAACCACAGAN
 C G T A C G T A C G T A A G T C A C G T C G T A A C T G C G T A A C T G C G T A A C G T
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AAACTAGAGA
AAACCACANN
 C G T A C G T A C G T A A G T C A C G T C G T A A C T G C G T A A C T G C G T A
G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AAACTAGAGA-
GWAAYHTGABMC
 A C G T C G T A C G T A C G T A A G T C A C G T C G T A A C T G C G T A A C T G C G T A A C G T
A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C