Information for 12-CTGCAGGWCCTGCAGM (Motif 12)

A T G C G A C T A T C G A G T C C G T A A C T G A C T G C G A T A G T C A G T C A C G T C T A G A T G C C T G A A T C G G T C A
Reverse Opposite:
A C G T A T G C G A C T A T C G G A T C C G T A A C T G A C T G C G T A A G T C A G T C A C G T C T A G A T G C C T G A A T C G
p-value:1e-6
log p-value:-1.398e+01
Information Content per bp:1.778
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.36%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.8 +/- 21.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTGCAGGWCCTGCAGM
SDGCAGGTGCNS----
 A T G C G A C T A T C G A G T C C G T A A C T G A C T G C G A T A G T C A G T C A C G T C T A G A T G C C T G A A T C G G T C A
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CTGCAGGWCCTGCAGM
----ACATCCTGNT--
 A T G C G A C T A T C G A G T C C G T A A C T G A C T G C G A T A G T C A G T C A C G T C T A G A T G C C T G A A T C G G T C A
A C G T A C G T A C G T A C G T C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:3
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CTGCAGGWCCTGCAGM-
---CAGGCCNNGGCCNN
 A T G C G A C T A T C G A G T C C G T A A C T G A C T G C G A T A G T C A G T C A C G T C T A G A T G C C T G A A T C G G T C A A C G T
A C G T A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CTGCAGGWCCTGCAGM
DCTCAGCAGG---------
 A C G T A C G T A C G T A T G C G A C T A T C G A G T C C G T A A C T G A C T G C G A T A G T C A G T C A C G T C T A G A T G C C T G A A T C G G T C A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CTGCAGGWCCTGCAGM
----AGGTCA------
 A T G C G A C T A T C G A G T C C G T A A C T G A C T G C G A T A G T C A G T C A C G T C T A G A T G C C T G A A T C G G T C A
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T

TCF3/MA0522.2/Jaspar

Match Rank:6
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CTGCAGGWCCTGCAGM
-NNCAGGTGTN-----
 A T G C G A C T A T C G A G T C C G T A A C T G A C T G C G A T A G T C A G T C A C G T C T A G A T G C C T G A A T C G G T C A
A C G T G T C A T C A G A G T C C G T A A T C G T A C G C G A T A C T G A G C T C A G T A C G T A C G T A C G T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:7
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CTGCAGGWCCTGCAGM
-AACAGGTGT------
 A T G C G A C T A T C G A G T C C G T A A C T G A C T G C G A T A G T C A G T C A C G T C T A G A T G C C T G A A T C G G T C A
A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T

TCF4/MA0830.1/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CTGCAGGWCCTGCAGM
-NNCAGGTGCG-----
 A T G C G A C T A T C G A G T C C G T A A C T G A C T G C G A T A G T C A G T C A C G T C T A G A T G C C T G A A T C G G T C A
A C G T G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----CTGCAGGWCCTGCAGM
GAGCACAGCAGGACA------
 A C G T A C G T A C G T A C G T A C G T A T G C G A C T A T C G A G T C C G T A A C T G A C T G C G A T A G T C A G T C A C G T C T A G A T G C C T G A A T C G G T C A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----CTGCAGGWCCTGCAGM
CCACACAGCAGGAGA------
 A C G T A C G T A C G T A C G T A C G T A T G C G A C T A T C G A G T C C G T A A C T G A C T G C G A T A G T C A G T C A C G T C T A G A T G C C T G A A T C G G T C A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T