Information for 7-CACTTTCAAA (Motif 5)

A G T C C G T A A G T C A C G T A C G T A C G T A T G C C G T A C T G A T C G A
Reverse Opposite:
A G C T A G C T A C G T A T C G T G C A G T C A C G T A A C T G C G A T A C T G
p-value:1e-11
log p-value:-2.588e+01
Information Content per bp:1.858
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.90%
Number of Background Sequences with motif91.1
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets51.9 +/- 31.7bp
Average Position of motif in Background51.2 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CACTTTCAAA
CGGTTTCAAA
 A G T C C G T A A G T C A C G T A C G T A C G T A T G C C G T A C T G A T C G A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

NKX2-3/MA0672.1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CACTTTCAAA
ACCACTTGAA--
 A C G T A C G T A G T C C G T A A G T C A C G T A C G T A C G T A T G C C G T A C T G A T C G A
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CACTTTCAAA--
CAATCACTGGCAGAAT
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C G T A C G T A T G C C G T A C T G A T C G A A C G T A C G T
A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

PH0111.1_Nkx2-2/Jaspar

Match Rank:4
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CACTTTCAAA--
ATAACCACTTGAAAATT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C G T A C G T A T G C C G T A C T G A T C G A A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

NKX2-8/MA0673.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CACTTTCAAA
CCACTTGAA--
 A C G T A G T C C G T A A G T C A C G T A C G T A C G T A T G C C G T A C T G A T C G A
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CACTTTCAAA
ACCACTTAA---
 A C G T A C G T A G T C C G T A A G T C A C G T A C G T A C G T A T G C C G T A C T G A T C G A
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CACTTTCAAA
ACCACTTAA---
 A C G T A C G T A G T C C G T A A G T C A C G T A C G T A C G T A T G C C G T A C T G A T C G A
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CACTTTCAAA----
TCACTTTCACTTTCN
 A C G T A G T C C G T A A G T C A C G T A C G T A C G T A T G C C G T A C T G A T C G A A C G T A C G T A C G T A C G T
G A C T G A T C T G C A A G T C G C A T G A C T A C G T A G T C G T C A G A T C A G C T A G C T G A C T G A T C G C A T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CACTTTCAAA
MRSCACTYAA---
 A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C G T A C G T A T G C C G T A C T G A T C G A
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:10
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CACTTTCAAA
ACTTTCACTTTC---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C G T A C G T A T G C C G T A C T G A T C G A
C T G A A T G C G A C T C G A T A G C T A G T C C G T A A T G C A C G T A C G T G A C T A G T C A C G T A C G T A C G T