Information for 6-CTGTCCAGCA (Motif 4)

A G T C A C G T A C T G A C G T A G T C A G T C C G T A A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A C G T A C T G A C T G C G T A A G T C C G T A A C T G
p-value:1e-53
log p-value:-1.231e+02
Information Content per bp:1.530
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif4.81%
Number of Background Sequences with motif43.6
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets51.3 +/- 8.3bp
Average Position of motif in Background35.6 +/- 44.1bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTGTCCAGCA-
NCTGTCAATCAN
 A C G T A G T C A C G T A C T G A C G T A G T C A G T C C G T A A C T G A G T C C G T A A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CTGTCCAGCA
GSCTGTCACTCA
 A C G T A C G T A G T C A C G T A C T G A C G T A G T C A G T C C G T A A C T G A G T C C G T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

MEIS2/MA0774.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCCAGCA
GCTGTCAA---
 A C G T A G T C A C G T A C T G A C G T A G T C A G T C C G T A A C T G A G T C C G T A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTGTCCAGCA-
-TGCCCAGNHW
 A G T C A C G T A C T G A C G T A G T C A G T C C G T A A C T G A G T C C G T A A C G T
A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTGTCCAGCA-
SCTGTCAVTCAV
 A C G T A G T C A C G T A C T G A C G T A G T C A G T C C G T A A C T G A G T C C G T A A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Bcl6/MA0463.1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CTGTCCAGCA--
NGCTTTCTAGGAAN
 A C G T A C G T A G T C A C G T A C T G A C G T A G T C A G T C C G T A A C T G A G T C C G T A A C G T A C G T
C G A T C A T G G T A C G A C T A G C T G A C T A G T C A G C T C G T A C T A G C A T G T C G A G C T A G T C A

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCCAGCA
CCTGTCAA---
 A C G T A G T C A C G T A C T G A C G T A G T C A G T C C G T A A C T G A G T C C G T A
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGTCCAGCA
GCTGTG-----
 A C G T A G T C A C G T A C T G A C G T A G T C A G T C C G T A A C T G A G T C C G T A
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTGTCCAGCA---
CTGTCTGTCACCT
 A G T C A C G T A C T G A C G T A G T C A G T C C G T A A C T G A G T C C G T A A C G T A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CTGTCCAGCA--
NNNCTTTCCAGGAAA
 A C G T A C G T A C G T A G T C A C G T A C T G A C G T A G T C A G T C C G T A A C T G A G T C C G T A A C G T A C G T
G A C T C G A T T C A G G A T C G A C T A G C T A G C T A G T C G A T C C G T A C T A G C T A G T C G A T C G A C T G A