Information for 7-TGCTAGACAA (Motif 3)

A C G T A C T G A G T C A G C T C T G A C T A G T G C A G T A C C G T A C T G A
Reverse Opposite:
A G C T C G A T A C T G A C G T A G T C A G C T C T G A A C T G A G T C C G T A
p-value:1e-22
log p-value:-5.107e+01
Information Content per bp:1.795
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif3.56%
Number of Background Sequences with motif143.9
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets56.6 +/- 25.4bp
Average Position of motif in Background48.5 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---TGCTAGACAA
AGGTGHCAGACA-
 A C G T A C G T A C G T A C G T A C T G A G T C A G C T C T G A C T A G T G C A G T A C C G T A C T G A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---TGCTAGACAA
AGGTGNCAGACAG
 A C G T A C G T A C G T A C G T A C T G A G T C A G C T C T G A C T A G T G C A G T A C C G T A C T G A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TGCTAGACAA
ATGCCAGACN-
 A C G T A C G T A C T G A G T C A G C T C T G A C T A G T G C A G T A C C G T A C T G A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TGCTAGACAA
--BCAGACWA
 A C G T A C T G A G T C A G C T C T G A C T A G T G C A G T A C C G T A C T G A
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TGCTAGACAA
--CCAGACAG
 A C G T A C T G A G T C A G C T C T G A C T A G T G C A G T A C C G T A C T G A
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TGCTAGACAA----
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C T G A G T C A G C T C T G A C T A G T G C A G T A C C G T A C T G A A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TGCTAGACAA--
ACTATGCCAACCTACC
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G C T C T G A C T A G T G C A G T A C C G T A C T G A A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TGCTAGACAA--
--CCAGACRSVB
 A C G T A C T G A G T C A G C T C T G A C T A G T G C A G T A C C G T A C T G A A C G T A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGCTAGACAA
TTGCCAAG---
 A C G T A C G T A C T G A G T C A G C T C T G A C T A G T G C A G T A C C G T A C T G A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGCTAGACAA
ATGCCAACC--
 A C G T A C G T A C T G A G T C A G C T C T G A C T A G T G C A G T A C C G T A C T G A
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T