Information for 1-GGACAGCKCC (Motif 2)

T C A G C A T G G C T A A T G C T C G A A C T G G A T C C A G T T A G C G A T C
Reverse Opposite:
C T A G A T C G G T C A C T A G T G A C A G C T T A C G C G A T G T A C A G T C
p-value:1e-392
log p-value:-9.030e+02
Information Content per bp:1.714
Number of Target Sequences with motif401.0
Percentage of Target Sequences with motif48.20%
Number of Background Sequences with motif1236.2
Percentage of Background Sequences with motif2.60%
Average Position of motif in Targets52.2 +/- 14.7bp
Average Position of motif in Background51.1 +/- 34.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GGACAGCKCC
-CACAGN---
 T C A G C A T G G C T A A T G C T C G A A C T G G A T C C A G T T A G C G A T C
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.70
Offset:-10
Orientation:reverse strand
Alignment:----------GGACAGCKCC
TCAGCACCATGGACAGCTCC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G G C T A A T G C T C G A A C T G G A T C C A G T T A G C G A T C
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

PH0169.1_Tgif1/Jaspar

Match Rank:3
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----GGACAGCKCC--
GATATTGACAGCTGCGT
 A C G T A C G T A C G T A C G T A C G T T C A G C A T G G C T A A T G C T C G A A C T G G A T C C A G T T A G C G A T C A C G T A C G T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

REST/MA0138.2/Jaspar

Match Rank:4
Score:0.70
Offset:-11
Orientation:forward strand
Alignment:-----------GGACAGCKCC
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G G C T A A T G C T C G A A C T G G A T C C A G T T A G C G A T C
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GGACAGCKCC
TTGACAGC---
 A C G T T C A G C A T G G C T A A T G C T C G A A C T G G A T C C A G T T A G C G A T C
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GGACAGCKCC
CCAGGAACAG----
 A C G T A C G T A C G T A C G T T C A G C A T G G C T A A T G C T C G A A C T G G A T C C A G T T A G C G A T C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GGACAGCKCC--
NNATTGACAGGTGCTT
 A C G T A C G T A C G T A C G T T C A G C A T G G C T A A T G C T C G A A C T G G A T C C A G T T A G C G A T C A C G T A C G T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GGACAGCKCC
TTGACAGG---
 A C G T T C A G C A T G G C T A A T G C T C G A A C T G G A T C C A G T T A G C G A T C
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T

PH0102.1_Meis1/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GGACAGCKCC--
NTATTGACAGCTNNTT
 A C G T A C G T A C G T A C G T T C A G C A T G G C T A A T G C T C G A A C T G G A T C C A G T T A G C G A T C A C G T A C G T
C T A G A C G T C G T A C G A T A C G T A C T G C G T A A G T C C T G A A C T G A T G C G A C T T A G C A T C G G C A T G C A T

Myod1/MA0499.1/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GGACAGCKCC-
NGNGACAGCTGCN
 A C G T A C G T T C A G C A T G G C T A A T G C T C G A A C T G G A T C C A G T T A G C G A T C A C G T
T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A