Information for 5-GCAATTTAAAGAG (Motif 13)

C T A G A G T C G T C A C G T A A C G T A G C T A C G T C G T A C G T A C G T A A C T G C G T A A C T G
Reverse Opposite:
A G T C C G A T A G T C A C G T A C G T A C G T C G T A C T G A C G T A A C G T A C G T A C T G A G T C
p-value:1e-10
log p-value:-2.500e+01
Information Content per bp:1.913
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.7 +/- 30.3bp
Average Position of motif in Background65.2 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCAATTTAAAGAG
--NATTCAAAT--
 C T A G A G T C G T C A C G T A A C G T A G C T A C G T C G T A C G T A C G T A A C T G C G T A A C T G
A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCAATTTAAAGAG
GCAATAAAAA---
 C T A G A G T C G T C A C G T A A C G T A G C T A C G T C G T A C G T A C G T A A C T G C G T A A C T G
T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T A C G T

MEF2D/MA0773.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCAATTTAAAGAG
TCTATTTATAGN-
 C T A G A G T C G T C A C G T A A C G T A G C T A C G T C G T A C G T A C G T A A C T G C G T A A C T G
C A G T A G T C A G C T C G T A C G A T G C A T C G A T G C T A C A G T C T G A C T A G G A C T A C G T

MEF2B/MA0660.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCAATTTAAAGAG
GCTATTTATAGC-
 C T A G A G T C G T C A C G T A A C G T A G C T A C G T C G T A C G T A C G T A A C T G C G T A A C T G
C A T G A G T C C A G T C G T A C G A T C G A T G C A T C G T A C G A T C T G A C A T G G A T C A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCAATTTAAAGAG----
-NAATTTTACGAGNTNN
 C T A G A G T C G T C A C G T A A C G T A G C T A C G T C G T A C G T A C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PH0113.1_Nkx2-4/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCAATTTAAAGAG-----
--AATTTCAAGTGGCTTN
 C T A G A G T C G T C A C G T A A C G T A G C T A C G T C G T A C G T A C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

PH0114.1_Nkx2-5/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCAATTTAAAGAG-----
--AAATTCAAGTGGNTTN
 C T A G A G T C G T C A C G T A A C G T A G C T A C G T C G T A C G T A C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

PH0063.1_Hoxb8/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCAATTTAAAGAG
ACCGGCAATTAATAAA-
 A C G T A C G T A C G T A C G T C T A G A G T C G T C A C G T A A C G T A G C T A C G T C G T A C G T A C G T A A C T G C G T A A C T G
G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCAATTTAAAGAG-----
-NANTTTCAAGTGGTTAN
 C T A G A G T C G T C A C G T A A C G T A G C T A C G T C G T A C G T A C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

MEF2A/MA0052.3/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCAATTTAAAGAG
TCTATTTTTAGA-
 C T A G A G T C G T C A C G T A A C G T A G C T A C G T C G T A C G T A C G T A A C T G C G T A A C T G
C A G T G A T C C A G T C T G A C G A T C G A T C G A T G C A T C G A T C T G A C A T G G T C A A C G T