Information for 14-TCACATAGTT (Motif 21)

A C G T A G T C C G T A A G T C C G T A A C G T C G T A A C T G A C G T A C G T
Reverse Opposite:
C G T A C G T A A G T C A C G T C G T A A C G T A C T G A C G T A C T G C G T A
p-value:1e-6
log p-value:-1.479e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.2 +/- 15.7bp
Average Position of motif in Background31.5 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0161.1_Rxra_2/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TCACATAGTT------
TCGCGAAGGTTGTACT
 A C G T A G T C C G T A A G T C C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TCACATAGTT
TGACCTARTT
 A C G T A G T C C G T A A G T C C G T A A C G T C G T A A C T G A C G T A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TCACATAGTT---
TTGACCTANTTATN
 A C G T A C G T A G T C C G T A A G T C C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

USF2/MA0526.1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TCACATAGTT
GGTCACATGAC-
 A C G T A C G T A C G T A G T C C G T A A G T C C G T A A C G T C G T A A C T G A C G T A C G T
C T A G T C A G A G C T A G T C C G T A A G T C T C G A A C G T A C T G T C G A A G T C A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TCACATAGTT-----
TACCCTAGTTACCGA
 A C G T A G T C C G T A A G T C C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

Sox5/MA0087.1/Jaspar

Match Rank:6
Score:0.59
Offset:4
Orientation:forward strand
Alignment:TCACATAGTT-
----ATTGTTA
 A C G T A G T C C G T A A G T C C G T A A C G T C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T

HMBOX1/MA0895.1/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TCACATAGTT---
---ACTAGTTAAC
 A C G T A G T C C G T A A G T C C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TCACATAGTT--
TWGHWACAWTGTWDC
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C G T
G C A T C G A T C T A G G C T A G C A T C G T A G A T C G C T A C G A T C G A T C T A G C G A T C G T A C G A T G A T C

DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TCACATAGTT--
YDGHTACAWTGTADC
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C G T
G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C

USF1/MA0093.2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TCACATAGTT
GGTCACGTGGC-
 A C G T A C G T A C G T A G T C C G T A A G T C C G T A A C G T C G T A A C T G A C G T A C G T
C T A G C T A G G A C T A G T C C G T A A G T C T C A G C G A T A C T G T C A G A G T C A C G T