Information for 3-KCRGCAGGGRGCAGSM (Motif 3)

A C T G A G T C C T G A C T A G A G T C C G T A A T C G C T A G A C T G C T A G A C T G A G T C C G T A A C T G T A G C G T C A
Reverse Opposite:
C A G T A T C G A G T C A C G T A C T G A G T C A G T C A G T C A G T C A T G C A C G T A C T G A G T C A G C T A C T G G T A C
p-value:1e-14
log p-value:-3.235e+01
Information Content per bp:1.863
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.1 +/- 19.1bp
Average Position of motif in Background33.1 +/- 16.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--KCRGCAGGGRGCAGSM
DCHCAGCAGGRGGCC---
 A C G T A C G T A C T G A G T C C T G A C T A G A G T C C G T A A T C G C T A G A C T G C T A G A C T G A G T C C G T A A C T G T A G C G T C A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-KCRGCAGGGRGCAGSM
CACAGCAGGGGG-----
 A C G T A C T G A G T C C T G A C T A G A G T C C G T A A T C G C T A G A C T G C T A G A C T G A G T C C G T A A C T G T A G C G T C A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-KCRGCAGGGRGCAGSM---
GCCASCAGGGGGCGCYVNNG
 A C G T A C T G A G T C C T G A C T A G A G T C C G T A A T C G C T A G A C T G C T A G A C T G A G T C C G T A A C T G T A G C G T C A A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

ZIC4/MA0751.1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--KCRGCAGGGRGCAGSM
NCNCAGCGGGGGGTC---
 A C G T A C G T A C T G A G T C C T G A C T A G A G T C C G T A A T C G C T A G A C T G C T A G A C T G A G T C C G T A A C T G T A G C G T C A
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--KCRGCAGGGRGCAGSM
NCGCAGCGGGGGGTC---
 A C G T A C G T A C T G A G T C C T G A C T A G A G T C C G T A A T C G C T A G A C T G C T A G A C T G A G T C C G T A A C T G T A G C G T C A
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-KCRGCAGGGRGCAGSM
CACAGCGGGGGGTC---
 A C G T A C T G A G T C C T G A C T A G A G T C C G T A A T C G C T A G A C T G C T A G A C T G A G T C C G T A A C T G T A G C G T C A
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---KCRGCAGGGRGCAGSM
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C T G A G T C C T G A C T A G A G T C C G T A A T C G C T A G A C T G C T A G A C T G A G T C C G T A A C T G T A G C G T C A
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---KCRGCAGGGRGCAGSM-
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C T G A G T C C T G A C T A G A G T C C G T A A T C G C T A G A C T G C T A G A C T G A G T C C G T A A C T G T A G C G T C A A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--KCRGCAGGGRGCAGSM
DCTCAGCAGG--------
 A C G T A C G T A C T G A G T C C T G A C T A G A G T C C G T A A T C G C T A G A C T G C T A G A C T G A G T C C G T A A C T G T A G C G T C A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:KCRGCAGGGRGCAGSM
------GGGAGGACNG
 A C T G A G T C C T G A C T A G A G T C C G T A A T C G C T A G A C T G C T A G A C T G A G T C C G T A A C T G T A G C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G