Information for 2-ATGCATATTCAKAMVG (Motif 3)

G C T A C G A T C T A G G T A C C G T A A G C T C G T A A G C T A C G T A T G C C G T A C A T G T C G A G T A C T G C A A T C G
Reverse Opposite:
T A G C A C G T C A T G A G C T G T A C A C G T T A C G G T C A C T G A C G A T C T G A A C G T A C T G A G T C C G T A C G A T
p-value:1e-20
log p-value:-4.811e+01
Information Content per bp:1.688
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.63%
Number of Background Sequences with motif14.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets54.1 +/- 17.5bp
Average Position of motif in Background39.7 +/- 24.0bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---ATGCATATTCAKAMVG
CTCATGAATATTCAT----
 A C G T A C G T A C G T G C T A C G A T C T A G G T A C C G T A A G C T C G T A A G C T A C G T A T G C C G T A C A T G T C G A G T A C T G C A A T C G
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-ATGCATATTCAKAMVG
YATGCATATRCATRT--
 A C G T G C T A C G A T C T A G G T A C C G T A A G C T C G T A A G C T A C G T A T G C C G T A C A T G T C G A G T A C T G C A A T C G
G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.81
Offset:0
Orientation:forward strand
Alignment:ATGCATATTCAKAMVG
ATGMATATDC------
 G C T A C G A T C T A G G T A C C G T A A G C T C G T A A G C T A C G T A T G C C G T A C A T G T C G A G T A C T G C A A T C G
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.78
Offset:0
Orientation:forward strand
Alignment:ATGCATATTCAKAMVG
ATGAATATTC------
 G C T A C G A T C T A G G T A C C G T A A G C T C G T A A G C T A C G T A T G C C G T A C A T G T C G A G T A C T G C A A T C G
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--ATGCATATTCAKAMVG
ATATGCAAATNNN-----
 A C G T A C G T G C T A C G A T C T A G G T A C C G T A A G C T C G T A A G C T A C G T A T G C C G T A C A T G T C G A G T A C T G C A A T C G
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:6
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----ATGCATATTCAKAMVG
AAAATATGCATAATAAA----
 A C G T A C G T A C G T A C G T A C G T G C T A C G A T C T A G G T A C C G T A A G C T C G T A A G C T A C G T A T G C C G T A C A T G T C G A G T A C T G C A A T C G
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A A C G T A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:ATGCATATTCAKAMVG-
GACCACATTCATACAAT
 G C T A C G A T C T A G G T A C C G T A A G C T C G T A A G C T A C G T A T G C C G T A C A T G T C G A G T A C T G C A A T C G A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PH0144.1_Pou2f2/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----ATGCATATTCAKAMVG
TTGTATGCAAATTAGA----
 A C G T A C G T A C G T A C G T G C T A C G A T C T A G G T A C C G T A A G C T C G T A A G C T A C G T A T G C C G T A C A T G T C G A G T A C T G C A A T C G
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A A C G T A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ATGCATATTCAKAMVG
TTGTATGCAAATTAGA----
 A C G T A C G T A C G T A C G T G C T A C G A T C T A G G T A C C G T A A G C T C G T A A G C T A C G T A T G C C G T A C A T G T C G A G T A C T G C A A T C G
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T A C G T A C G T A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ATGCATATTCAKAMVG
TTGTATGCAAATTAGA----
 A C G T A C G T A C G T A C G T G C T A C G A T C T A G G T A C C G T A A G C T C G T A A G C T A C G T A T G C C G T A C A T G T C G A G T A C T G C A A T C G
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T A C G T A C G T A C G T