Information for 12-ACTGTGAATA (Motif 17)

C G T A A G T C C G A T T C A G C G A T C T A G T C G A C G T A A G C T C T G A
Reverse Opposite:
G A C T T C G A G C A T A G C T G A T C C G T A A G T C G C T A T C A G G C A T
p-value:1e-8
log p-value:-1.847e+01
Information Content per bp:1.689
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif3.48%
Number of Background Sequences with motif510.7
Percentage of Background Sequences with motif1.06%
Average Position of motif in Targets51.9 +/- 27.3bp
Average Position of motif in Background50.0 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:ACTGTGAATA---
---ATGMATATDC
 C G T A A G T C C G A T T C A G C G A T C T A G T C G A C G T A A G C T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

MEF2D/MA0773.1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ACTGTGAATA--
ACTATAAATAGA
 C G T A A G T C C G A T T C A G C G A T C T A G T C G A C G T A A G C T C T G A A C G T A C G T
C T G A G A T C G A C T G T C A C G A T G C T A C G T A G C T A A C G T C T G A T C A G G T C A

MEF2B/MA0660.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ACTGTGAATA--
GCTATAAATAGC
 C G T A A G T C C G A T T C A G C G A T C T A G T C G A C G T A A G C T C T G A A C G T A C G T
C T A G G T A C A G C T C G T A G C A T C G T A G C T A C G T A A C G T G C T A T C A G G T A C

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:ACTGTGAATA---
---ATGAATATTC
 C G T A A G T C C G A T T C A G C G A T C T A G T C G A C G T A A G C T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

FOXB1/MA0845.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:ACTGTGAATA-
TATGTAAATAT
 C G T A A G T C C G A T T C A G C G A T C T A G T C G A C G T A A G C T C T G A A C G T
G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:ACTGTGAATA
GCTGTG----
 C G T A A G T C C G A T T C A G C G A T C T A G T C G A C G T A A G C T C T G A
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:ACTGTGAATA-
-CCAAAAATAG
 C G T A A G T C C G A T T C A G C G A T C T A G T C G A C G T A A G C T C T G A A C G T
A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G

MEF2A/MA0052.3/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ACTGTGAATA--
TCTAAAAATAGA
 C G T A A G T C C G A T T C A G C G A T C T A G T C G A C G T A A G C T C T G A A C G T A C G T
C A G T G A T C A G C T G C T A C G T A G C T A C G T A G C T A A G C T G T C A C T A G G T C A

Gfi1b/MA0483.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-ACTGTGAATA
TGCTGTGATTT
 A C G T C G T A A G T C C G A T T C A G C G A T C T A G T C G A C G T A A G C T C T G A
C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:ACTGTGAATA-
-CTGTGGTTTN
 C G T A A G T C C G A T T C A G C G A T C T A G T C G A C G T A A G C T C T G A A C G T
A C G T G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G