Information for 12-CGCTCAAATC (Motif 20)

T A G C A T C G A G T C A C G T A T G C C G T A C T G A C G T A A C G T A G T C
Reverse Opposite:
A C T G G T C A A C G T A G C T A C G T A T C G C G T A A C T G T A G C A C T G
p-value:1e-7
log p-value:-1.685e+01
Information Content per bp:1.868
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.24%
Number of Background Sequences with motif46.1
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets49.2 +/- 15.9bp
Average Position of motif in Background47.3 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Gfi1/MA0038.1/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CGCTCAAATC----
----CAAATCACTG
 T A G C A T C G A G T C A C G T A T G C C G T A C T G A C G T A A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CGCTCAAATC
AGCCACTCAAG--
 A C G T A C G T A C G T T A G C A T C G A G T C A C G T A T G C C G T A C T G A C G T A A C G T A G T C
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T

PB0184.1_Tbp_2/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CGCTCAAATC--
GNNCGCTTAAATCGG
 A C G T A C G T A C G T T A G C A T C G A G T C A C G T A T G C C G T A C T G A C G T A A C G T A G T C A C G T A C G T
C A T G T A C G C A G T G T A C A T C G T A G C C G A T C A G T C G T A C G T A C T G A G C A T A T G C T A C G A C T G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CGCTCAAATC
AASCACTCAA---
 A C G T A C G T A C G T T A G C A T C G A G T C A C G T A T G C C G T A C T G A C G T A A C G T A G T C
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T

PB0125.1_Gata3_2/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CGCTCAAATC-------
NNNNNCGATANNATCTNNNNAN
 A C G T A C G T A C G T A C G T A C G T T A G C A T C G A G T C A C G T A T G C C G T A C T G A C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C G T A C G T A T A C G A G C T G A T C C T A G T C G A A G C T C T G A T G C A C G T A C T G A C A G T G A T C C G A T T C G A A G T C G C T A C G T A T G C A C T G A

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CGCTCAAATC
NGCTN-----
 T A G C A T C G A G T C A C G T A T G C C G T A C T G A C G T A A C G T A G T C
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CGCTCAAATC
--CACTAATT
 T A G C A T C G A G T C A C G T A T G C C G T A C T G A C G T A A C G T A G T C
A C G T A C G T G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CGCTCAAATC
NSCACTYVAV--
 A C G T A C G T T A G C A T C G A G T C A C G T A T G C C G T A C T G A C G T A A C G T A G T C
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CGCTCAAATC
ACATCAAAGG
 T A G C A T C G A G T C A C G T A T G C C G T A C T G A C G T A A C G T A G T C
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

PH0037.1_Hdx/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CGCTCAAATC------
AAGGCGAAATCATCGCA
 A C G T T A G C A T C G A G T C A C G T A T G C C G T A C T G A C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A