Information for 11-GKGWAACCCC (Motif 16)

A C T G A C G T A T C G G C T A C G T A C G T A G A T C G T A C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G C T A G A C G T A C G T C G A T A T G C G T C A A G T C
p-value:1e-8
log p-value:-1.922e+01
Information Content per bp:1.837
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.10%
Number of Background Sequences with motif136.4
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets38.8 +/- 23.1bp
Average Position of motif in Background44.5 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GKGWAACCCC--
GGGAAATCCCCN
 A C T G A C G T A T C G G C T A C G T A C G T A G A T C G T A C A G T C A G T C A C G T A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GKGWAACCCC-
-GGAAANCCCC
 A C T G A C G T A T C G G C T A C G T A C G T A G A T C G T A C A G T C A G T C A C G T
A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:3
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GKGWAACCCC
GGGGGAATCCCC
 A C G T A C G T A C T G A C G T A T C G G C T A C G T A C G T A G A T C G T A C A G T C A G T C
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GKGWAACCCC-
-GGAAATCCCC
 A C T G A C G T A T C G G C T A C G T A C G T A G A T C G T A C A G T C A G T C A C G T
A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GKGWAACCCC-
-GGAAATTCCC
 A C T G A C G T A T C G G C T A C G T A C G T A G A T C G T A C A G T C A G T C A C G T
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

NFKB2/MA0778.1/Jaspar

Match Rank:6
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GKGWAACCCC-
AGGGGAATCCCCT
 A C G T A C G T A C T G A C G T A T C G G C T A C G T A C G T A G A T C G T A C A G T C A G T C A C G T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:7
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GKGWAACCCC
AGATGCAATCCC
 A C G T A C G T A C T G A C G T A T C G G C T A C G T A C G T A G A T C G T A C A G T C A G T C
T C G A C T A G C T G A A G C T A C T G G T A C G T C A T G C A A G C T T G A C T A G C A G T C

PB0156.1_Plagl1_2/Jaspar

Match Rank:8
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GKGWAACCCC----
NNNNGGTACCCCCCANN
 A C G T A C G T A C G T A C T G A C G T A T C G G C T A C G T A C G T A G A T C G T A C A G T C A G T C A C G T A C G T A C G T A C G T
G C T A C T G A C T A G C A T G C A T G C A T G G A C T C G T A A G T C T A G C A G T C A G T C G A T C G A T C C G T A T A C G G A T C

NFKB1/MA0105.4/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GKGWAACCCC-
AGGGGAATCCCCT
 A C G T A C G T A C T G A C G T A T C G G C T A C G T A C G T A G A T C G T A C A G T C A G T C A C G T
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GKGWAACCCC-
---TAATCCCN
 A C T G A C G T A T C G G C T A C G T A C G T A G A T C G T A C A G T C A G T C A C G T
A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G